Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,955,646 – 13,955,738 |
Length | 92 |
Max. P | 0.565645 |
Location | 13,955,646 – 13,955,738 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.68 |
Mean single sequence MFE | -8.77 |
Consensus MFE | -6.24 |
Energy contribution | -6.93 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.07 |
Mean z-score | -1.55 |
Structure conservation index | 0.71 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13955646 92 + 22407834 ACUUA---AUACUUCCGCUU-AUUCAAGUCGCACCUAUAACUAAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAUUAAA---- .....---........((..-((((((((..((.((.......)).)).))))))))....)).................................---- ( -8.50) >DroGri_CAF1 48663 86 + 1 AAAUAUUUUCAUUUCCGCU-AACUCAAGUUGU--UAAUAGUCAAUUUGAACUUGAUUCAAUGCCAACU-----------GCAAUUCUAAAUAGAACUUUA .......(((.........-...((((((((.--.......))))))))...........(((.....-----------)))..........)))..... ( -8.80) >DroSec_CAF1 43488 92 + 1 ACUUA---AUACUUCCGCUU-AUUCAAGUCGCACCUAUAACUAAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAUUAAA---- .....---........((..-((((((((..((.((.......)).)).))))))))....)).................................---- ( -8.50) >DroSim_CAF1 43663 92 + 1 ACUUA---AUACUUCCGCUU-AUUCAAGUCGCACCUAUAACUAAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAAUAAA---- .....---........((..-((((((((..((.((.......)).)).))))))))....)).................................---- ( -8.50) >DroEre_CAF1 44527 92 + 1 ACUUA---AUACUUCCGCUU-AUUCAAGUCGCACCUAUAACUAAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAUUAAA---- .....---........((..-((((((((..((.((.......)).)).))))))))....)).................................---- ( -8.50) >DroAna_CAF1 42623 92 + 1 ACUUA---CCACUUCCGCUU-UUUCAAGUUGCACCUAUAACCGAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAUUAAA---- .....---........((..-.((((((((.((.((.......)).)))))))))).....)).................................---- ( -9.80) >consensus ACUUA___AUACUUCCGCUU_AUUCAAGUCGCACCUAUAACUAAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAUUAAA____ ................((...((((((((..((.((.......)).)).))))))))....))..................................... ( -6.24 = -6.93 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:11 2006