Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,949,825 – 13,949,926 |
Length | 101 |
Max. P | 0.995182 |
Location | 13,949,825 – 13,949,926 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 88.49 |
Mean single sequence MFE | -31.28 |
Consensus MFE | -30.21 |
Energy contribution | -30.40 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.24 |
Mean z-score | -2.44 |
Structure conservation index | 0.97 |
SVM decision value | 2.55 |
SVM RNA-class probability | 0.995182 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13949825 101 - 22407834 UUCUU-UUGUGGCCAAGGGCGUCGUUCAAAAGGCAAAUCUGGUUUUGCCUCUUACGUAUCUCGGUUAGUCUUGAUUGGAUGCGUUAUCUAAUGGUCACAUUU .....-.((((((((..((...........(((((((......)))))))...(((((((.((((((....)))))))))))))...))..))))))))... ( -31.40) >DroSec_CAF1 37626 102 - 1 UUCUUUUUGUGGCCAAGGGCGUCGUUCAAAAGGCAAAUCAGGUUUGGCCUUUUACGUAUUUCGGUUAAUCUUGAUUGGAUGCGUUAUCUAAUGGUCACAUUU .......((((((((((.((((((((.....))).(((((((.((((((.............)))))).))))))).))))).))......))))))))... ( -29.12) >DroEre_CAF1 38795 100 - 1 UUCUU--UGUGACCAAGGGCGUCGGUAAAAAGGCCAAACAGGUUUGGCCUUUCGCGCAUCUCAGUUAGUCUUGAUUGGAUGCGUUAUCUAAUGUUCACAUUU .....--.........((((((..(...((((((((((....)))))))))).(((((((.((((((....)))))))))))))...)..))))))...... ( -33.90) >DroYak_CAF1 39188 100 - 1 UUCUU--UGGGGCCAAGGGCGUCGUUCAGAAGGCAAAUCAGGUUUGGCCUUUCGCGUAUCUCAGUUAGUGUUAAUUGGAUGCGUUAGCUAAUGGUCACAUUU .....--((.(((((..(((........((((((.((......)).)))))).(((((((.((((((....)))))))))))))..)))..))))).))... ( -30.70) >consensus UUCUU__UGUGGCCAAGGGCGUCGUUCAAAAGGCAAAUCAGGUUUGGCCUUUCACGUAUCUCAGUUAGUCUUGAUUGGAUGCGUUAUCUAAUGGUCACAUUU .......((((((((..((........((((((((((......))))))))))(((((((.((((((....)))))))))))))...))..))))))))... (-30.21 = -30.40 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:08 2006