Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,913,967 – 13,914,072 |
Length | 105 |
Max. P | 0.848155 |
Location | 13,913,967 – 13,914,072 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 68.24 |
Mean single sequence MFE | -29.34 |
Consensus MFE | -8.25 |
Energy contribution | -7.78 |
Covariance contribution | -0.46 |
Combinations/Pair | 1.57 |
Mean z-score | -2.23 |
Structure conservation index | 0.28 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13913967 105 + 22407834 UAAUGCAAGUCGAGCUUAAUCGAUGCUCUAAGCUAAACAAAC--------GGCAAUGACGUUGUAUGGAUCUA---CUUAUGCUGGGUCAUUGAU--UUGUUUACAUUAAAUAAGUUA (((((...(((((......)))))((.....))((((((((.--------..(((((((.(.((((((.....---.)))))).).))))))).)--))))))))))))......... ( -26.00) >DroSec_CAF1 1768 112 + 1 UAAUGCAAGUCGAGCUUAAUCGAAGCUCUAAGCUAAACAAACAGUUUAACGGCAAUGACUUUGCAUGGGUCUA---CUUAUGCUGGGUCAUUGAU--UUGUUUAUAUUAAAUAAUUU- ....(((((((((((((.....))))))...(((((((.....))))...)))(((((((..(((((((....---)))))))..))))))))))--))))................- ( -34.50) >DroSim_CAF1 2487 112 + 1 UAAUGCAAGUCGAGCUUAAUCGAAGCUCUAGGCUAAACAAACAGUUUAAUGGCAAUGACUUUGUAUGGGUCUA---CUUAUGCUGGGUCAUUGAU--UUGUUUAUAUUAAAUAAUUU- ....(((((((((((((.....))))))...(((((((.....)))...))))(((((((..(((((((....---)))))))..))))))))))--))))................- ( -32.40) >DroEre_CAF1 1816 114 + 1 AAGUGCAAGUCGAGCUCAAUCUGAGCUCUAAGC-AAACAAAUAGUUUAACGACAUUAGCUUUGUAUCGUUCUACUACUAAUCGCGGGUCAUUGAU--UUGUAUACACAAAGUAGUU-A ..(((((((((((((((.....))))))...((-.......((((..(((((.((.......)).)))))..))))......))........)))--)))))).............-. ( -27.82) >DroYak_CAF1 1824 114 + 1 UAAUGCAAGUCCGGCUUAGUCUAAGCUCUGAGCUAAACAAAAAGCUUAACGGCGAUUACUUUGUAUGGAUCUU---CUUAUGGUGGAUCAUUGAUAGUUUGAAAUACUAUAUUGAU-A ..((((((((..(((((((........)))))))..)).....(((....))).......))))))..(((..---..(((((((..(((.........)))..)))))))..)))-. ( -23.80) >DroPer_CAF1 1644 102 + 1 UUGUGGAACGCAUGCGCAACAUCAGCGCCAGCUGCGGCGAAUAGCCGAUCAGCAACAAAUUUGCCUCGCUCUA---C-------GGGUCACUGAU--UUGCAUUCAG---GUGCUUU- (((((.(.....).)))))....((((((.((((((((.....))))..))))..((((((((.((((.....---)-------))).))..)))--)))......)---)))))..- ( -31.50) >consensus UAAUGCAAGUCGAGCUUAAUCGAAGCUCUAAGCUAAACAAACAGUUUAACGGCAAUGACUUUGUAUGGAUCUA___CUUAUGCUGGGUCAUUGAU__UUGUAUACAUUAAAUAAUUU_ ....((.....((((((.....))))))...))...((((...........((((.....))))...(((((............)))))........))))................. ( -8.25 = -7.78 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:01 2006