Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,911,557 – 13,911,647 |
Length | 90 |
Max. P | 0.552698 |
Location | 13,911,557 – 13,911,647 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 79.27 |
Mean single sequence MFE | -23.18 |
Consensus MFE | -16.55 |
Energy contribution | -16.88 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.14 |
Mean z-score | -1.08 |
Structure conservation index | 0.71 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13911557 90 + 22407834 GACUGCUCACCUACUUUCAACCUCUGCAAGACUGGUUGCAGCACCAGAAUCAAGAAAACAACCUGGAAGUGGGCUGGACAUAAGAUU--UGG------ ...((..((((((((((((...((.....))(((((......)))))................)))))))))).))..)).......--...------ ( -21.20) >DroPse_CAF1 69223 98 + 1 GGUUGUUGGCCUACUUCAAGCCCCUACACGAUUGGUUGGUGCAGCAGAAUCAGCUACAAAAUCUGGAUGUGGGUUGGGCAUAGAAUACAUAGUAUUAA (((.....)))........((((...((((.(..(....((.(((.......))).))....)..).))))....))))....(((((...))))).. ( -21.10) >DroSec_CAF1 55431 96 + 1 GACUGCUCACCUACUUUCAACCUCUGCAAGACUGGUUGCAACACCAGAAUCAAGAAAACAACCUGGAAGUGGGCUGGACAUAAGUUU--UAUUAUUUA ...((..((((((((((((...((.....))(((((......)))))................)))))))))).))..)).......--......... ( -21.20) >DroSim_CAF1 57649 96 + 1 GACUGCUCACCUACUUUCAACCUCUGCAAGACUGGUUGCAACACCAGAAUCAAGAGAACAACCUGGAAGUGGGCUGGACAUAAGUUU--UAGUAUUUA ...((..((((((((((((..((((......(((((......))))).....)))).......)))))))))).))..)).......--......... ( -23.50) >DroEre_CAF1 55422 84 + 1 GACUGCUCACCUACUUCCAACCUCUUCAAGACUGGUUGCAGCACCAGAAUCAGGAGAACAACCUGGAAGUGGGCUGGACAU--------------UUA ...((..((((((((((((...(((((....(((((......))))).....)))))......)))))))))).))..)).--------------... ( -27.20) >DroYak_CAF1 57779 96 + 1 GACUGCUUGCCUACUUUCAACCUCUUCAUGACUGGCUGCAGCACCAGAAUCAAGAAAACAACCUGGAAGUGGGCUGGACAUAAAUUU--GAGCACUUA ...((((.(((((((((((.....(((.(((((((........))))..))).))).......)))))))))))....((......)--))))).... ( -24.90) >consensus GACUGCUCACCUACUUUCAACCUCUGCAAGACUGGUUGCAGCACCAGAAUCAAGAAAACAACCUGGAAGUGGGCUGGACAUAAGUUU__UAGUAUUUA ...((((..((((((((((...((.....))(((((......)))))................))))))))))..)).)).................. (-16.55 = -16.88 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:59 2006