Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,903,636 – 13,903,744 |
Length | 108 |
Max. P | 0.555723 |
Location | 13,903,636 – 13,903,744 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 81.23 |
Mean single sequence MFE | -34.14 |
Consensus MFE | -25.58 |
Energy contribution | -25.28 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.37 |
Mean z-score | -1.22 |
Structure conservation index | 0.75 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13903636 108 + 22407834 AUUUCGUGCUGGAACAGCUGUCCCACCGACUGCACAUUCCUCUUGGCAUCGUCCAGUUGCUUGGAGGCGGUGUAGAGGGAUCUGUAUG-GACGAUUUGAUGCGAUUUAU ...((((.(....((((..(((((.....((((((...(((((.((((.(.....).)))).)))))..)))))).)))))))))..)-.))))............... ( -34.90) >DroVir_CAF1 65829 102 + 1 AUAUCGUGCUGGAAUAGUUGUCCAACAUUUUGUACAUUUCGCUUGGCAUCGUCCAGCUGCUUGGAGACGGUGUAUAAGGCGCUGUAAGAAUCAUG--UAUAGGA----- .....(((.((((.......)))).)))(((((((((..(((((.((((((((...((....)).))))))))...)))))...........)))--)))))).----- ( -25.42) >DroSec_CAF1 47348 108 + 1 AUUUCGUGCUGGAAUAGCUGCCCCACCGUUUGCACAUUCCUCUUGGCAUCGUCCAGUUGCUUAGAGGCGGUGUAGAGGGACCUGUAUG-GAUGAUUUGACACGAUUUAU ...(((((.(.((((..........((.(((((((...(((((.((((.(.....).)))).)))))..))))))).)).((.....)-)...)))).))))))..... ( -34.60) >DroSim_CAF1 49613 108 + 1 AUUUCGUGCUGGAAUAGCUGUCCCACCGUUUGCACAUUCCUCUUGGCUUCGUCCAGUUGCUUGGAGGCGGUGUAGAGGGACCUGUAUG-GAUGAUUUGACACGAUUUAU ...(((((.(.((((..(((((((....(((((((...(((((.(((..(.....)..))).)))))..))))))))))))......)-)...)))).))))))..... ( -33.20) >DroEre_CAF1 47476 108 + 1 AUUUCGUGCUGGAACAGCUGUCCCACCGUCUGCACAUUCUUCUUGGCAUCAUCCAGUUGCUUGGAGGCGGUGUAGAGGGACCUAUUUG-UGCGUUUUGGUAUGGGAGUU .(..(((((..((((.((.(((((....(((((((...(((((.((((.(.....).)))).)))))..)))))))))))).......-.))))))..)))))..)... ( -41.80) >DroYak_CAF1 49596 108 + 1 AUUUCGUGCUGGAACAGCUGUCCCACCGUCUGCACAUUCUUCUUGGCAUCAUCCAGUUGCUUGGAGGCGGUGUAGAGGGACCUAUAUG-GGCGAUUUGGUAUAGAUGUU .....((((..((...((((((((....(((((((...(((((.((((.(.....).)))).)))))..)))))))))))).......-)))..))..))))....... ( -34.91) >consensus AUUUCGUGCUGGAACAGCUGUCCCACCGUCUGCACAUUCCUCUUGGCAUCGUCCAGUUGCUUGGAGGCGGUGUAGAGGGACCUGUAUG_GACGAUUUGAUACGAUUUAU ...((((((((...)))).(((((....(((((((...(((((.((((.(.....).)))).)))))..))))))))))))...................))))..... (-25.58 = -25.28 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:58 2006