Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,891,933 – 13,892,028 |
Length | 95 |
Max. P | 0.537374 |
Location | 13,891,933 – 13,892,028 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 74.28 |
Mean single sequence MFE | -29.63 |
Consensus MFE | -16.23 |
Energy contribution | -18.40 |
Covariance contribution | 2.17 |
Combinations/Pair | 1.21 |
Mean z-score | -1.49 |
Structure conservation index | 0.55 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13891933 95 - 22407834 AUCGGCCAGGAGAUGAUGGCCUAGAUGACGAUGAUGAUGAUGAUG---------CGGCUGCUGCAUCACGUUCUGCCAUAAUGGCCAACAAAAACUGGACCCGU ...((((((....((.(((((...(((.((.....((((.(((((---------(((...)))))))))))).)).)))...))))).))....)))).))... ( -32.00) >DroSec_CAF1 35725 95 - 1 AUCGGCCAGGAGAUGAUGGCCGAGAUGACGAUGAUGAUGGUGAUG---------CGGCUGCUGCAUCACGUUCUGCCAUAAUGGCCAACAAAAACUGGACCCGU ...((((((....((.((((((..(((.((.....((..((((((---------(((...)))))))))..)))).)))..)))))).))....)))).))... ( -33.90) >DroSim_CAF1 37490 95 - 1 AUCGGCCAGGAGAUGAUGGCCGAGAUGACGAUGAUGAUGGUGAUG---------CGGCUGCUGCAUCACGUUCUGCCAUAAUGGCCAACAAAAACUGGACCCGU ...((((((....((.((((((..(((.((.....((..((((((---------(((...)))))))))..)))).)))..)))))).))....)))).))... ( -33.90) >DroEre_CAF1 35926 89 - 1 UUCGGCCAGGAGAUGAUGGCCGAGAUGAUGAUGACGAUG---------------CGGCUGCUGCAUCACGUUCUGCCAUAAUGGCCAACAAAAACUAGACCCCU ((((((((........))))))))...........((((---------------(((...)))))))..(((..(((.....))).)))............... ( -27.10) >DroYak_CAF1 37925 104 - 1 AUUCGCCAGGAGAUGAUGGCCGAGAUGAUGAUGAUGAUGGUGGUGCGACUGCUGCUGUUGCUGCAUCACGUACUGCAAUAAUGGCCAACAAAAACUGGACCCCU .....((((....((.((((((..((.((....)).)).(..(((((..(((.((....)).)))...)))))..).....)))))).))....))))...... ( -31.80) >DroMoj_CAF1 53041 75 - 1 ACAGCCCCAA---------------U-GCGAUGAUAUUGG----A---------CAGUUGCCGCAUCACGUAAACUUCUAACGUGCAAAAAGCAUGGGAGCCCU ...((((((.---------------(-((..(((..((((----(---------.((((..((.....))..)))))))))..).))....))))))).))... ( -19.10) >consensus AUCGGCCAGGAGAUGAUGGCCGAGAUGACGAUGAUGAUGGUGAUG_________CGGCUGCUGCAUCACGUUCUGCCAUAAUGGCCAACAAAAACUGGACCCCU ...((((((....((.((((((..((((((.(((((.((((..................)))))))))))).....)))..)))))).))....)))).))... (-16.23 = -18.40 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:52 2006