Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,888,095 – 13,888,187 |
Length | 92 |
Max. P | 0.600110 |
Location | 13,888,095 – 13,888,187 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 94.00 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -19.95 |
Energy contribution | -20.70 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.85 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13888095 92 - 22407834 AUUGGGUUUUCCUUCUCCGAUUCCGAUUUCGAUUCCAGCCGAUCCUCGGCUGCUGUCGUCCC---AACAAAAGGCAAAGAAAAUUAGCAAAGCCC ...(((((((.(((((((...........((((..((((((.....))))))..))))....---.......))...))).....)).))))))) ( -25.05) >DroSec_CAF1 31897 95 - 1 AUUGGGUUUUCCUUCUCCGAUUCCGAUUUCGAUUCCAGCCGAUCCUCGGCUGCCGUCGACCCAGCAACAAAAGGCAAAGAAAAUUAGCAAAGCCC ...(((((((.((...............(((((..((((((.....))))))..)))))....((........))..........)).))))))) ( -25.50) >DroSim_CAF1 33644 95 - 1 AUUGGGUUUUCCUUCUCCGAUUCCGAUUUCGAUUCCAGCCGAUCCUCGGCUGCCGUCGACCCAGCAACAAAAGGCAAAGAAAAUUAGCAAAGCCC ...(((((((.((...............(((((..((((((.....))))))..)))))....((........))..........)).))))))) ( -25.50) >DroEre_CAF1 32066 91 - 1 AUUGGUUUUUC-CUUUCCGAUUCCGAUUUCGAUUCCAGCCGAUCCUCUGCUGCUGUCGACCC---AACAAAAGGCAAAGAAAAUUAGCAAAGCCC ...((((((.(-((((((..........(((((..((((.(.....).))))..)))))...---.......)).)))).......).)))))). ( -17.56) >consensus AUUGGGUUUUCCUUCUCCGAUUCCGAUUUCGAUUCCAGCCGAUCCUCGGCUGCCGUCGACCC___AACAAAAGGCAAAGAAAAUUAGCAAAGCCC ...(((((((..................(((((..((((((.....))))))..)))))..............((.((.....)).))))))))) (-19.95 = -20.70 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:51 2006