Locus 4873

Sequence ID 2L_DroMel_CAF1
Location 13,881,392 – 13,881,499
Length 107
Max. P 0.967370
window7728

overview

Window 8

Location 13,881,392 – 13,881,499
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 96.05
Mean single sequence MFE -20.52
Consensus MFE -17.80
Energy contribution -17.84
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.84
Structure conservation index 0.87
SVM decision value 1.61
SVM RNA-class probability 0.967370
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13881392 107 + 22407834
UCUGCCCCAUUGCAAUUUUUCAUGCUGCAACGCAUUCCUGCAUGUGUGUGCGGAUAUUUUCCCUGAUCGCCUCAUUAAUUUCCACUCAAAUUGCAAAAUUCCAUUCG
.........(((((((((........(((((((((......)))))).)))(((.(((.....(((.....)))..))).)))....)))))))))........... ( -19.50)
>DroSec_CAF1 25386 106 + 1
UUUGCCCCAUUGCAAUUUUUCAUGCUGCAACGCAUUCCUGCAUGUGUGUGCAGAUAUUUUCCCUGAUCGAGUCAUUAAUUUCCACUCAAAUUGCAA-AUUCCAUUCG
.........(((((((((......(((((((((((......)))))).)))))...............((((...........)))))))))))))-.......... ( -22.50)
>DroSim_CAF1 26951 106 + 1
UUUGCCCCCUUGCAAUUUUUCAUGCUGGAACGCAUUCCUGCAUGUGUGUGCAGAUAUUUUUCCUGAUCGCCUCAUUAAUUUCCACUCAAAUUGCAA-AUUCCAUUCG
.........(((((((((..(((((.((((....)))).))))).(((..(((.........)))..))).................)))))))))-.......... ( -21.20)
>DroEre_CAF1 25504 106 + 1
UUCGCCCCAUUGCAAUUUUUCAUGCUGCAACGCAUUCCUGCAUGUGUGUGCAGAUAUUUCCCCUGAUCGCCUCAUUAAUUUCCACUCAAAUUGCAA-AUUCCAUUCG
.........(((((((((......(((((((((((......)))))).)))))..........(((.....))).............)))))))))-.......... ( -19.70)
>DroYak_CAF1 27241 106 + 1
UUUGCCCCAUUGCAAUUUUUCAUGCUGCAACGCAUUCCUGCAUGUGUGUGCAGAUAUUUUUCCUGAUCGCCUCAUUAAUUUCCACUCAAAUUGCAA-AUUCCAUUCG
.........(((((((((......(((((((((((......)))))).)))))..........(((.....))).............)))))))))-.......... ( -19.70)
>consensus
UUUGCCCCAUUGCAAUUUUUCAUGCUGCAACGCAUUCCUGCAUGUGUGUGCAGAUAUUUUCCCUGAUCGCCUCAUUAAUUUCCACUCAAAUUGCAA_AUUCCAUUCG
.........(((((((((......(((((((((((......)))))).)))))..........(((.....))).............)))))))))........... (-17.80 = -17.84 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:50 2006