| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,880,196 – 13,880,286 |
| Length | 90 |
| Max. P | 0.500000 |
| Location | 13,880,196 – 13,880,286 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.99 |
| Mean single sequence MFE | -20.05 |
| Consensus MFE | -12.71 |
| Energy contribution | -12.93 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13880196 90 + 22407834 A-AA-A-AAUAGAGAAAAAAAUGUUACAACCUUUUGAAUGUGCCACAUCGCGUGUCAUGUGUCAAAGUGUGAGC-------CAAACUUUGGGUGUUGUAA .-..-.-................(((((((.(((((((((((.(((.....))).))))).)))))).....((-------(........)))))))))) ( -16.20) >DroSec_CAF1 24205 89 + 1 GAAA-A-AAUAGAGAAAAAA--GUUAAAAACUUUUGAAUGUGGCACAUCGCGUGUCAUGUGUCAAAGUGUGUGG-------CAAACUUUGGGUGUUGUAA ....-.-.((((.....(((--(((....(((((((((((((((((.....))))))))).)))))).))....-------..)))))).....)))).. ( -18.30) >DroSim_CAF1 25763 89 + 1 GAAA-A-AAUAGAGGAAAAA--GUUAAAAACUUUUGAAUGUGGCGCAUCGCGUGUCAUGUGUCAAAGUGUGUGG-------CAAACUUUGGGUGUUGUAA ....-.-..(((((......--((((...(((((.(((((((((((.....))))))))).)))))))...)))-------)...))))).......... ( -17.90) >DroEre_CAF1 24354 90 + 1 ACAAAA-AAUAGAGGAAAAA--GUAAAAACCUUUUGAAUAUGGCACAUCGCGUGUCAUGUGUCAAAGUGUGAGG-------CAAACUUUGGCUGUUGUAA ((((..-..(((((......--((....((.(((((((((((((((.....))))))))).)))))).))...)-------)...)))))....)))).. ( -21.60) >DroYak_CAF1 26067 91 + 1 AAAAAAUGAUAAAGGAAAAA--GUUACAACCUUUUGAAUGUGGCACAUCGCGUGUCAUGUGUCAAAGUGUGAGG-------CAAACUUUGGGUGUUGUAA ....................--.(((((((((.....(((((((((.....)))))))))..((((((......-------...)))))))).))))))) ( -20.20) >DroAna_CAF1 22682 92 + 1 UUGA-A-AAUAAAUGAGAG------AAAGACGCAACAAUGUGGCACAUCGCGUGUCAUGUGUCAAAGUGUGAGGCAAGAGGCAAACUCGGGGCGUUACAA ....-.-............------...((((((......((((((.....))))))))))))....(((((.((..(((.....)))...)).))))). ( -26.10) >consensus AAAA_A_AAUAGAGGAAAAA__GUUAAAAACUUUUGAAUGUGGCACAUCGCGUGUCAUGUGUCAAAGUGUGAGG_______CAAACUUUGGGUGUUGUAA .....................................(((((((((.....))))))))).(((((((.((..........)).)))))))......... (-12.71 = -12.93 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:49 2006