Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,445,152 – 1,445,250 |
Length | 98 |
Max. P | 0.825577 |
Location | 1,445,152 – 1,445,250 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 81.12 |
Mean single sequence MFE | -22.55 |
Consensus MFE | -17.00 |
Energy contribution | -16.25 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.14 |
Mean z-score | -1.47 |
Structure conservation index | 0.75 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1445152 98 + 22407834 GUUCAUGUAUCUGAGCUGUGCAUCUCGAAGUUAGAGAUGGUACACAGUCACGAG-----GAAAAGUACAUUACGUAUUACAUAUUUAUUAUAUUUU------GAUAUUA ....((((((((((.(((((((((((.......))))))...)))))))).)).-----.....((((.....)))))))))...(((((.....)------))))... ( -20.00) >DroSec_CAF1 63175 94 + 1 GUUCAUGUAUCUGAGCUGUGCAUCUCGAAGUUAGAGAUGGUACACAGUCACGAU-----GAAAAGUACAUUACGUAUUACGUA----UUACAUAGU------UAUUAUA .......(((((((.(((((((((((.......))))))...)))))))).)))-----)....(((...((((.....))))----.))).....------....... ( -22.10) >DroSim_CAF1 65693 94 + 1 GUUCAUGUAUCUGAGCUGUGCAUCUCGAAGUUAGAGAUGGUACACAGUCACGAU-----GAAAAGUACAUUGCGUAUUACGUA----UUACAUAUU------UAUUAUA .......(((((((.(((((((((((.......))))))...)))))))).)))-----)....(((...((((.....))))----.))).....------....... ( -22.10) >DroYak_CAF1 64519 105 + 1 GUUCGUGUAUCUGAGCUGUGCAUCUCGAACUUAGGGAUGGCACACAGUCACGAGCCAAGGAAAAUUGCACUCCAUUUUAAACA----UUAAAUAUUUUGCUUUAUUUUG (((((((...(((...((((((((((.......))))).)))))))).))))))).....(((((.(((....((((......----..))))....)))...))))). ( -26.00) >consensus GUUCAUGUAUCUGAGCUGUGCAUCUCGAAGUUAGAGAUGGUACACAGUCACGAG_____GAAAAGUACAUUACGUAUUACAUA____UUACAUAUU______UAUUAUA ....((((((((((.(((((((((((.......))))))...)))))))).))............)))))....................................... (-17.00 = -16.25 + -0.75)
Location | 1,445,152 – 1,445,250 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 81.12 |
Mean single sequence MFE | -19.98 |
Consensus MFE | -14.40 |
Energy contribution | -13.90 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.19 |
Mean z-score | -1.86 |
Structure conservation index | 0.72 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1445152 98 - 22407834 UAAUAUC------AAAAUAUAAUAAAUAUGUAAUACGUAAUGUACUUUUC-----CUCGUGACUGUGUACCAUCUCUAACUUCGAGAUGCACAGCUCAGAUACAUGAAC .......------.............((((((.(((.....)))......-----.((.((((((((...((((((.......))))))))))).)))))))))))... ( -18.30) >DroSec_CAF1 63175 94 - 1 UAUAAUA------ACUAUGUAA----UACGUAAUACGUAAUGUACUUUUC-----AUCGUGACUGUGUACCAUCUCUAACUUCGAGAUGCACAGCUCAGAUACAUGAAC .......------..((((((.----((((.....))))...........-----.((.((((((((...((((((.......))))))))))).)))))))))))... ( -21.80) >DroSim_CAF1 65693 94 - 1 UAUAAUA------AAUAUGUAA----UACGUAAUACGCAAUGUACUUUUC-----AUCGUGACUGUGUACCAUCUCUAACUUCGAGAUGCACAGCUCAGAUACAUGAAC .......------..((((((.----(((((........)))))......-----.((.((((((((...((((((.......))))))))))).)))))))))))... ( -20.70) >DroYak_CAF1 64519 105 - 1 CAAAAUAAAGCAAAAUAUUUAA----UGUUUAAAAUGGAGUGCAAUUUUCCUUGGCUCGUGACUGUGUGCCAUCCCUAAGUUCGAGAUGCACAGCUCAGAUACACGAAC .........(((...(((((..----......)))))...))).............(((((.((((((((.(((.(.......).))))))))...)))...))))).. ( -19.10) >consensus UAAAAUA______AAUAUGUAA____UACGUAAUACGUAAUGUACUUUUC_____AUCGUGACUGUGUACCAUCUCUAACUUCGAGAUGCACAGCUCAGAUACAUGAAC ..........................(((((........)))))............(((((.(((.((..((((((.......))))))....)).)))...))))).. (-14.40 = -13.90 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:20 2006