Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,848,190 – 13,848,283 |
Length | 93 |
Max. P | 0.978987 |
Location | 13,848,190 – 13,848,283 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 77.79 |
Mean single sequence MFE | -23.42 |
Consensus MFE | -16.56 |
Energy contribution | -16.60 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -2.20 |
Structure conservation index | 0.71 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.978987 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13848190 93 - 22407834 CGCCUGCCAGGACACAAUAAACUGGGGGGCAACUAAAGAAUGGGUUUCGAUUUUGAGUUGGUAAUAUU--UAAAUUUAAAUCGAUAAU--AUUUCAG .((((.((((...........)))).)))).......(((...((((((((((.(((((.........--..)))))))))))).)))--..))).. ( -24.10) >DroSec_CAF1 1377 85 - 1 AGCCUGCCAGGACACAAUGAACUGGGGGGCAACUAAAGAAUGGGUUUCAAUUUUGAGUUGAUUAUAUU--AAAAUUAAGAACGACAA---------- .((((.((((..(.....)..)))).))))..........((.((((.((((((((..........))--))))))..))))..)).---------- ( -20.00) >DroSim_CAF1 2901 93 - 1 CGCCUGCCAGGACACAAUGAACUGGGGGGCAACUAAAGAAUGGGUUUCAAUUUUGAGUCGGUUAUAUU--AAAAUUAACAACGACAAU--AUUUUAG .((((.((((..(.....)..)))).))))..((((((((.....)))........((((((((....--.....))))..))))...--..))))) ( -23.50) >DroEre_CAF1 1504 92 - 1 CGCCUGCCAGGACACAACGAACUGGGGGGCAACUAAAGAAUAGGUAUCGAUUUUGAGUUGCAAGUAUAUACAAA-----AUGGAUAUUUUACUUUAU .((((.((((..(.....)..)))).))))...(((((...(((((((.((((((.((.........)).))))-----)).)))))))..))))). ( -27.70) >DroYak_CAF1 2918 88 - 1 CGCCUGCCAGGACACAAUGAACUGGGGGGCAACUAGAAAAUAUGUUGCGAUUUUGAGUUGGGAAUAUG--GAAA-----ACCGACAAU--GCUUCAA .((((.((((..(.....)..)))).))))..........................(((((.......--....-----.)))))...--....... ( -21.80) >consensus CGCCUGCCAGGACACAAUGAACUGGGGGGCAACUAAAGAAUGGGUUUCGAUUUUGAGUUGGUAAUAUU__AAAAUU_A_AACGACAAU__ACUUCAG .((((.((((...........)))).))))((((..(((((........))))).))))...................................... (-16.56 = -16.60 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:43 2006