Locus 4867

Sequence ID 2L_DroMel_CAF1
Location 13,846,714 – 13,846,816
Length 102
Max. P 0.524514
window7720

overview

Window 0

Location 13,846,714 – 13,846,816
Length 102
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 69.66
Mean single sequence MFE -28.78
Consensus MFE -5.98
Energy contribution -6.02
Covariance contribution 0.04
Combinations/Pair 1.25
Mean z-score -1.74
Structure conservation index 0.21
SVM decision value -0.02
SVM RNA-class probability 0.524514
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13846714 102 - 22407834
GGCCAAAAGGGUCACAAAAACACAAACGAUAGCUUUCAUUGUAUAGC-CAGCCACCUGAUUGAU--UGUCCCAGCCGGUCAG--UGGCUUUUAUAGCAAAGCUAGCG-------------
((((.....)))).............((.(((((((..(((((....-.((((((.((((((..--((...))..)))))))--)))))..))))).))))))).))------------- ( -28.70)
>DroSim_CAF1 1446 102 - 1
GGCCAGAAGGGCCACAAAAACACAAACGAUAGCUUUCAUUGUAUAGC-CAGCCACCUGAUUGAU--UGUCCCAGCCGGUCAG--UGGCUUUUAUAGCAAAACUUGCG-------------
((((.....))))..................((.....((((((((.-.((((((.((((((..--((...))..)))))))--))))).)))).)))).....)).------------- ( -27.50)
>DroWil_CAF1 2156 114 - 1
GGCAAAAAGGGCCACAAAAACAUACGCGAAAGCUCUCAUUGUUAGACUUUGAUAGCUG-UUGAAAUUAACUU---AAGUCAG--CGCCUUUUAUAGCCGUUUUUUAGUUAAACCAAACAG
(((..(((((((..................((((.(((..(.....)..))).))))(-((((..(......---)..))))--))))))))...)))........(((......))).. ( -23.50)
>DroYak_CAF1 1473 98 - 1
GGCCAAAAGGGCCACAAAAACACAAACGAUAGCUUUCAUUGUAUAGC-----CACCUGUUCGAU--UGUUCCAGCCGGUCAG--UGGCUUUUAUAGCAAAGCUUUGG-------------
((((.....)))).............(((.((((((..(((((.(((-----(((.((..((..--((...))..))..)))--)))))..))))).))))))))).------------- ( -28.80)
>DroPer_CAF1 41 95 - 1
GGCCAAAAGGGCCACAAAAACAUAGGCGAAAGCUUUCAUGGUAUAGC-CAGC----UG-UUGAA--UG--CCAACAGGUGGGGCUGCCUUUUAUACCCAGGCGCC---------------
((((.....)))).......(((((((....))))..)))......(-((.(----((-(((..--..--.)))))).)))(((.((((.........)))))))--------------- ( -35.40)
>consensus
GGCCAAAAGGGCCACAAAAACACAAACGAUAGCUUUCAUUGUAUAGC_CAGCCACCUG_UUGAU__UGUCCCAGCCGGUCAG__UGGCUUUUAUAGCAAAGCUUGCG_____________
((((.....))))........................................................................................................... ( -5.98 =  -6.02 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:42 2006