Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,845,381 – 13,845,498 |
Length | 117 |
Max. P | 0.847566 |
Location | 13,845,381 – 13,845,498 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 97.15 |
Mean single sequence MFE | -32.90 |
Consensus MFE | -31.62 |
Energy contribution | -31.40 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.96 |
Structure conservation index | 0.96 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.847566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13845381 117 - 22407834 AUUAAAAUUAAAAAAUUUGCCAACCGGGGAAUCGUUGGCCGAGAUAAGACAGCAAUAGGCCAUCGAUUGAACGCCCGGUGGCUAAUCAAAUCGUUCACGAGUACGAAGCCACCUUAU .........................(((((((((.(((((.................))))).)))))...).)))(((((((.......(((....)))......))))))).... ( -32.85) >DroSim_CAF1 119 117 - 1 AUUAAAAUUAAAAAAUUUGCCAACCGGGGAAUCGUUGGCCGAGAUAAGACAGCAAUAGGCCAUCGAUUGUACGCCCGGUGGCUAAUCAAAUCGUUCCCGAGUACGAAGCCCCCUUAU ..................((((.(((((((((((.(((((.................))))).)))))...).)))))))))........((((........))))........... ( -32.33) >DroYak_CAF1 117 117 - 1 AUUAAAAUUAAAAAAUUUGCCAACCGGGGAAUCGGUGGUCGAGAUAAGACAGCAAUAGGCCAUCGAUUGAACGCCCGGUGGCUAAUCAAAUCGUUCCCGAGUACGAAGCCCCCUUAU ..................((((.(((((((((((((((((.................)))))))))))...).)))))))))........((((........))))........... ( -33.53) >consensus AUUAAAAUUAAAAAAUUUGCCAACCGGGGAAUCGUUGGCCGAGAUAAGACAGCAAUAGGCCAUCGAUUGAACGCCCGGUGGCUAAUCAAAUCGUUCCCGAGUACGAAGCCCCCUUAU ..................((((.(((((((((((.(((((.................))))).)))))...).)))))))))........((((........))))........... (-31.62 = -31.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:41 2006