Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,845,263 – 13,845,355 |
Length | 92 |
Max. P | 0.801188 |
Location | 13,845,263 – 13,845,355 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -25.20 |
Energy contribution | -25.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 1.00 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13845263 92 - 22407834 UCUAUAAAAAGCGACUCGUGCGACCGGACGACUGAGUAGUAUAAAUACCGUAGGUACUACGAUCAGUCGGUAGGACUCUCAGUCAAAGCAAU ..........((.....((.(....).))(((((((.(((.....(((((..(((......)))...)))))..))))))))))...))... ( -25.20) >DroSim_CAF1 1 92 - 1 UCUAUAAAAAGCGACUCGUGCGACCGGACGACUGAGUAGUAUAAAUACCGUAGGUACUACGAUCAGUCGGUAGGACUCUCAGUCAAAGCAAU ..........((.....((.(....).))(((((((.(((.....(((((..(((......)))...)))))..))))))))))...))... ( -25.20) >DroYak_CAF1 1 92 - 1 UCUAUAAAAAGCGACUCGUGCGACCGGACGACUGAGUAGUAUAAAUACCGUAGGUACUACGAUCAGUCGGUAGGACUCUCAGUCAAAGCAAU ..........((.....((.(....).))(((((((.(((.....(((((..(((......)))...)))))..))))))))))...))... ( -25.20) >consensus UCUAUAAAAAGCGACUCGUGCGACCGGACGACUGAGUAGUAUAAAUACCGUAGGUACUACGAUCAGUCGGUAGGACUCUCAGUCAAAGCAAU ..........((.....((.(....).))(((((((.(((.....(((((..(((......)))...)))))..))))))))))...))... (-25.20 = -25.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:40 2006