Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,835,354 – 13,835,447 |
Length | 93 |
Max. P | 0.566690 |
Location | 13,835,354 – 13,835,447 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 80.79 |
Mean single sequence MFE | -21.72 |
Consensus MFE | -10.98 |
Energy contribution | -12.74 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.21 |
Mean z-score | -2.01 |
Structure conservation index | 0.51 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13835354 93 - 22407834 GUGUACAGUGAUUUCAUUACACCAGACACACAUGUAAUCACGGGAUUAAUUCG-GAAUAUUACACUUAUGGAGUAAGCACUGUACUAUGAAGUG ..((((((((......((((.(((........((((((..((((.....))))-....))))))....))).)))).))))))))......... ( -20.20) >DroSec_CAF1 1932 91 - 1 GUAU-UAGUGUUUGCAUUACAUUUGACAAACAUGUAAUCACGGCAUGUUUUUAUGA--AUUACAUUUAUGGAGUAAGCACUGUACUAUGAAGUG ((((-.(((((((((.............(((((((.......)))))))(((((((--((...))))))))))))))))))))))......... ( -22.50) >DroSim_CAF1 3085 91 - 1 GUAU-UAGUGUUUGCAUUACAUUUGACAAACAUGUAAUCACGGCAUGUUUUUAUGA--AUUACAUUUAUGGAGUAAGCACUGUACUAUGAAGUG ((((-.(((((((((.............(((((((.......)))))))(((((((--((...))))))))))))))))))))))......... ( -22.50) >DroEre_CAF1 3055 93 - 1 CCAUUCAGUGCUUACAUAACAGUAGAUAAACAUGUAAUUACUGCAGGUUUUUGUGA-CUUUACAUUUAUGGAGUAAGCACUGUACUAUGAACUG .(((.((((((((((....((((((.((......)).)))))).(((((.....))-)))............))))))))))....)))..... ( -22.70) >DroYak_CAF1 2908 93 - 1 CCAUUCAGGGUUUUCAUAACAGUACACAAUCAUGUAAUUACUGCAUGUUUUUGUGA-UAUUCAAUUUAUGGAGUUUGCACUGUACUAUGAAGUU ((.....))..((((((((((((.(((((.((((((.....))))))...))))).-..((((.....))))......)))))..))))))).. ( -20.70) >consensus GUAU_CAGUGUUUGCAUUACAGUAGACAAACAUGUAAUCACGGCAUGUUUUUGUGA__AUUACAUUUAUGGAGUAAGCACUGUACUAUGAAGUG .....((((((((((.............(((((((.......)))))))(((((((.........)))))))))))))))))............ (-10.98 = -12.74 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:37 2006