Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,439,477 – 1,439,578 |
Length | 101 |
Max. P | 0.716972 |
Location | 1,439,477 – 1,439,578 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 86.79 |
Mean single sequence MFE | -28.40 |
Consensus MFE | -21.38 |
Energy contribution | -21.19 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.71 |
Structure conservation index | 0.75 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716972 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1439477 101 + 22407834 CCCUUGUCGCCGAGAAUAAACAUCGUAAUUGCGAGUUUGUGUGGGCGACACAGCAUCAACAUGAACUGGGAACACCACU--------------GAACU--GAAAUACCAGAUGAACC ....(((((((.(..((((((.((((....)))))))))).).)))))))(((..((.....))..(((.....)))))--------------)..((--(......)))....... ( -27.10) >DroSec_CAF1 57466 100 + 1 CCCUUGUCGCCGAGAAUAAACAUCGUAAUUGCGAGUUUGUGUGGGCGACACAGCAUCAACAUGAACUG-GAACACCACU--------------GAACU--GAAAUACCAGAUGAACC ....(((((((.(..((((((.((((....)))))))))).).)))))))(((..((.....))..((-(....)))))--------------)..((--(......)))....... ( -25.80) >DroEre_CAF1 59798 100 + 1 CCCUUGUCGCCGAGAAUAAACAUCGUAAUUGCGAGUUUGUGUGGGCGACACAACAUCAACAUGAACUG-GAACACCACG--------------GCACU--GAGAUGCCAGAUGAACC ....(((((((.(..((((((.((((....)))))))))).).)))))))...((((.........((-(....))).(--------------(((..--....)))).)))).... ( -32.60) >DroYak_CAF1 59023 114 + 1 CCCUUGUCGCCGAGAGUAAACAUCGUAAUUGCGAGUUUGUGUGGGCGACACAACAUCAACAUGAACUG-GAACACCAGAACUCCAAAGCUACAGAACUAUUAGAUG--AGAUGAACC ....(((((((.(.(.(((((.((((....)))))))))).).)))))))...((((........(((-(....))))..........(((.........)))...--.)))).... ( -28.10) >consensus CCCUUGUCGCCGAGAAUAAACAUCGUAAUUGCGAGUUUGUGUGGGCGACACAACAUCAACAUGAACUG_GAACACCACU______________GAACU__GAAAUACCAGAUGAACC ....(((((((.(..((((((.((((....)))))))))).).)))))))...((((....................................................)))).... (-21.38 = -21.19 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:18 2006