Locus 4859

Sequence ID 2L_DroMel_CAF1
Location 13,824,443 – 13,824,563
Length 120
Max. P 0.527840
window7708

overview

Window 8

Location 13,824,443 – 13,824,563
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.94
Mean single sequence MFE -42.55
Consensus MFE -28.27
Energy contribution -26.17
Covariance contribution -2.10
Combinations/Pair 1.55
Mean z-score -1.35
Structure conservation index 0.66
SVM decision value -0.01
SVM RNA-class probability 0.527840
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13824443 120 - 22407834
UUGGGUGGUACAGAGCGGUGCAGUGGACUUCCUUCAUCUGAUGCUGGUGAGCAUGCGAUGGCUGAUGGGAUCGCAUGUUAGAUUCUGCUUGAGCUUCCAUGAUGAAUUGCGCUACUUGGU
.........((.(((..(((((((((....)).(((((.((.(((((((((((((((((..(....)..))))))))).....)).)))..))).))...))))))))))))..))).)) ( -35.60)
>DroVir_CAF1 14691 120 - 1
UUGGGUGGUGCAGAGCGGUGCUGUGGAUUUUCUUCACUUGAUGCUGGUCAGCAUGCGUUGGCUUCUGGGUACGCAUGCCCGCUUUUGUUUAAGCUUUCACGAUGAGCUGCGCUAUCUGGU
(..(((((((((((((((.((.(((((.....))))).....))......((((((((..(((....))))))))))))))))))......(((((.......)))))))))))))..). ( -44.90)
>DroGri_CAF1 13373 120 - 1
UUGGGUGGUGCAGAGUGGUGCUGUGGACUUUCUGCACUUGAUGCUGGUCAGCAUGCGUUGGCUUCUGGGACCGCAUGCUCGCUUCUGCCUGAGCUUCCACGACGAGCUGCGCUACCUGGU
(..((((((((((.((.(((.(((((.(((...((...(((((((....))))).))...))....))).))))).((((((....))..))))...))).))...))))))))))..). ( -49.00)
>DroWil_CAF1 12158 120 - 1
UUGGGUGGUACAAAGUGGAGCUGUCGACUUUCUUCAUCUGAUGUUGGUCAGCAUGCGUUGGCUAAUGGGCAGCCAUGCCCGUUUCUGUCUAAGUUUCCACGAUGAAUUGCGUUAUUUAGU
....(..((.((..((((((((((((((..((.......)).))))).))))..((...(((.((((((((....))))))))...)))...)).)))))..)).))..).......... ( -39.40)
>DroMoj_CAF1 13616 120 - 1
UUGGGUGGUGCAGAGCGGAGCAGUGGACUUUCUACACUUAAUGCUUGUUAGCAUGCGUUGGCUCCUGGGUCCGCAUGCUCGAUUCUGUUUGAGUUUCCACGACGAGCUACGUUAUUUGGU
....((((.((((((..(((((((((((((.......(((((((.((....)).))))))).....)))))))).)))))..))))))........))))((((.....))))....... ( -39.20)
>DroAna_CAF1 9876 120 - 1
CUGGGUGGUGCAAAGUGGAGCCGUGGACUUCUUGCACCUGAUGUUAGUCAGUAUGCGAUGGCUCAUGGGGCCCCAUGUUCGCUUCUGUUUGAGCUUCCACGAUGAGCUGCGCUACCUGGU
(..(((((((((..((((((.(((((.....(((((.(((((....)))))..))))).((((.....)))))))))...((((......)))))))))).......)))))))))..). ( -47.20)
>consensus
UUGGGUGGUGCAGAGCGGAGCUGUGGACUUUCUUCACCUGAUGCUGGUCAGCAUGCGUUGGCUCAUGGGACCGCAUGCUCGCUUCUGUUUGAGCUUCCACGAUGAGCUGCGCUACCUGGU
(..((((((((((..((....((((((.............(((((....)))))((...(((...((((........)))).....)))...)).)))))).))..))))))))))..). (-28.27 = -26.17 +  -2.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:30 2006