Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,812,362 – 13,812,458 |
Length | 96 |
Max. P | 0.943806 |
Location | 13,812,362 – 13,812,458 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.39 |
Mean single sequence MFE | -19.24 |
Consensus MFE | -12.09 |
Energy contribution | -12.29 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.19 |
Mean z-score | -2.44 |
Structure conservation index | 0.63 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13812362 96 + 22407834 UUUGUCAGCUAAAGUUGGUUUGUAAAUGGUGCAGGAAAUCCAAU--------CUAUCAUUGCAUCAUCUACGAACAAACCUACAACUCUUUCAAACUAACCAUU .((((((((....))))(((((((.(((((((((((........--------...)).))))))))).)))))))......))))................... ( -21.30) >DroSec_CAF1 312 95 + 1 UUUGUCAGCUAAA-UUAGCUUGUAAAUGGUGCAGGAAAUCCAAU--------CUAUCAUUGUACCAUCUACGAACAAAUCUACAAAUCUUUCAAACUAACCAUU (((((..((((..-.))))(((((.(((((((((((........--------...)).))))))))).)))))))))).......................... ( -17.70) >DroSim_CAF1 312 95 + 1 UUUGUCAGCUAAA-UUAGCUUGUAAAUGGUGCAGGAAAUCCAAU--------CUAUCAUUGUACCAUCUACGAACAAAUCUACAAAUCUUUCAAACUAACCAUU (((((..((((..-.))))(((((.(((((((((((........--------...)).))))))))).)))))))))).......................... ( -17.70) >DroEre_CAF1 312 103 + 1 UUUGUUACCUAAA-GCUGCUUGUAAAUGGUGCAGGAAAUCCGAUUCAAAACACUAUCACUGCCCCAUUUACGAAGAGACCUACAGCACUGUGAAACUAACCAUU .............-((((.((((((((((.(((((....))(((..........)))..))).))))))))))((....)).)))).................. ( -21.50) >DroYak_CAF1 312 102 + 1 UUUGUCACUUAAA-GCUGCUUAUAAAUGGUGCAGGAAAUCCGAUUCAAAACAUUAUCACUGCC-CAUUUACGAAGAUAUCUACAGCUCCUUGAAACUAAACAUU ....(((.....(-((((.(..(((((((.(((((....))(((..........)))..))))-))))))..)((....)).)))))...)))........... ( -18.00) >consensus UUUGUCAGCUAAA_UUAGCUUGUAAAUGGUGCAGGAAAUCCAAU________CUAUCAUUGCACCAUCUACGAACAAAUCUACAACUCUUUCAAACUAACCAUU ...................(((((.(((((((((((...................)).))))))))).)))))............................... (-12.09 = -12.29 + 0.20)
Location | 13,812,362 – 13,812,458 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 81.39 |
Mean single sequence MFE | -23.88 |
Consensus MFE | -15.56 |
Energy contribution | -16.40 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.30 |
Mean z-score | -1.65 |
Structure conservation index | 0.65 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13812362 96 - 22407834 AAUGGUUAGUUUGAAAGAGUUGUAGGUUUGUUCGUAGAUGAUGCAAUGAUAG--------AUUGGAUUUCCUGCACCAUUUACAAACCAACUUUAGCUGACAAA ....(((((((....((((((...(((((((..((((..(((.((((.....--------)))).)))..)))).......))))))))))))))))))))... ( -24.10) >DroSec_CAF1 312 95 - 1 AAUGGUUAGUUUGAAAGAUUUGUAGAUUUGUUCGUAGAUGGUACAAUGAUAG--------AUUGGAUUUCCUGCACCAUUUACAAGCUAA-UUUAGCUGACAAA ....((((((((....))....((((((.(((.(((((((((.((.......--------...((....)))).))))))))).))).))-))))))))))... ( -21.00) >DroSim_CAF1 312 95 - 1 AAUGGUUAGUUUGAAAGAUUUGUAGAUUUGUUCGUAGAUGGUACAAUGAUAG--------AUUGGAUUUCCUGCACCAUUUACAAGCUAA-UUUAGCUGACAAA ....((((((((....))....((((((.(((.(((((((((.((.......--------...((....)))).))))))))).))).))-))))))))))... ( -21.00) >DroEre_CAF1 312 103 - 1 AAUGGUUAGUUUCACAGUGCUGUAGGUCUCUUCGUAAAUGGGGCAGUGAUAGUGUUUUGAAUCGGAUUUCCUGCACCAUUUACAAGCAGC-UUUAGGUAACAAA ....((((.((.......(((((.((.....))((((((((.((((.((....((((......)))).)))))).))))))))..)))))-...)).))))... ( -25.70) >DroYak_CAF1 312 102 - 1 AAUGUUUAGUUUCAAGGAGCUGUAGAUAUCUUCGUAAAUG-GGCAGUGAUAAUGUUUUGAAUCGGAUUUCCUGCACCAUUUAUAAGCAGC-UUUAAGUGACAAA ........(((....((((((((.((.....))(((((((-(((((.((...((........))....)))))).))))))))..)))))-)))....)))... ( -27.60) >consensus AAUGGUUAGUUUGAAAGAGUUGUAGAUUUGUUCGUAGAUGGUGCAAUGAUAG________AUUGGAUUUCCUGCACCAUUUACAAGCAAA_UUUAGCUGACAAA ....(((((((......((((...((.....))((((((((((((..(((..........)))((....)))))))))))))).))))......)))))))... (-15.56 = -16.40 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:27 2006