Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,808,779 – 13,808,869 |
Length | 90 |
Max. P | 0.658050 |
Location | 13,808,779 – 13,808,869 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 79.35 |
Mean single sequence MFE | -35.45 |
Consensus MFE | -21.96 |
Energy contribution | -21.63 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.27 |
Mean z-score | -1.60 |
Structure conservation index | 0.62 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13808779 90 - 22407834 UCCACGGGCGACUGACGAUGUCCCGACGCCUGUGGGUACUCCUUGGCCCAGUGGGCAGGUCCUGAAAUAGGAACAUUGAAUGGGGCGGG--U ((((((((((...(((...)))....)))))))))).....((((.((((.....(((.(((((...)))))...)))..)))).))))--. ( -34.90) >DroPse_CAF1 16189 78 - 1 UCCACGGGCGACUGGCGAUGUCCGGACGCCUGUGGAUAGUCCUUGGCCCAGUGCGCGGGUCCUGGGG-AA-UACAAUGAA------------ ((((((((((.((((......)))).))))))))))...((((((((((.......)))))..))))-).-.........------------ ( -35.50) >DroEre_CAF1 14580 87 - 1 UCCACGGGCGACUGACGGUGUCCCGACGCUUGUGGGUAGUCCUUGGCCCAGUGGGCAGGUCCUGGAA---GGACAUUGAAUGGGACGGG--U ((((((((((.....(((....))).))))))))))..(((((..((((...))))..((((.....---)))).......)))))...--. ( -34.90) >DroYak_CAF1 14850 90 - 1 UCCACAGGCGACUGGCGGUGUCCGGACGCUUGUGGGUAGUCCUUGGCCCAGUGGGCAGGUCCUGGAAAAGGAAUAUUGAAUGGGGCGGG--U ((((((((((.((((......)))).)))))))))).....((((.((((.....(((.((((.....))))...)))..)))).))))--. ( -38.80) >DroAna_CAF1 14777 91 - 1 UCAACGGGGGACUGGCGAUGUCCCGAUGCCUGUGGGUAGUCCUUGGCCCAGUGGGCAGGUCCUGAAAUAAU-CCAAUGAAAGGAGAGGGGCU ((..(((....)))..)).(((((..(((((((((((........))))).))))))..((((...((...-...))...))))..))))). ( -33.10) >DroPer_CAF1 16351 78 - 1 UCCACGGGCGACUGGCGAUGUCCGGACGCCUGUGGAUAGUCCUUGGCCCAGUGCGCGGGUCCUGGGG-AA-UACAAUGAA------------ ((((((((((.((((......)))).))))))))))...((((((((((.......)))))..))))-).-.........------------ ( -35.50) >consensus UCCACGGGCGACUGGCGAUGUCCCGACGCCUGUGGGUAGUCCUUGGCCCAGUGGGCAGGUCCUGGAA_AAGAACAAUGAAUGGGGCGGG__U ((((((((((...(((...)))....))))))))))(((..((((.((....)).))))..)))............................ (-21.96 = -21.63 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:24 2006