Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,803,574 – 13,803,667 |
Length | 93 |
Max. P | 0.524828 |
Location | 13,803,574 – 13,803,667 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 83.40 |
Mean single sequence MFE | -40.30 |
Consensus MFE | -26.72 |
Energy contribution | -27.75 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.24 |
Mean z-score | -1.91 |
Structure conservation index | 0.66 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13803574 93 - 22407834 UGGAGCGUCGACUGUAUGGUAAGUCCGACGGUCUCAGACUGACGGACUCGGGGCAGCGCU---GCUGACUUGAAAGUCGGCAGCGACUGCGAAGCG ....((.((..(((.......((((((.(((((...))))).))))))))).((((((((---(((((((....))))))))))).)))))).)). ( -45.41) >DroGri_CAF1 10053 88 - 1 -GGAGCG-CGUCUGUUUAGUUAGUCCGCUGGCUGUAGACUGUUCGAUGCGAGGCAGCGCC---GCUGACUUCGAAGCCGU-UGCGCCAACUAAA-- -((.(((-((.((....(((((((.(((((.(((((..........))).)).)))))..---)))))))....)).)).-))).)).......-- ( -29.30) >DroSec_CAF1 9714 96 - 1 UGGAGCGUCGACUGUUUGGUAAGUCCGACGGUCUCAGACUGACGGACUCGGGGCAGCGCUGCUGCUGACUUGAAAGCCGGCAGCGACUGCGAAGCG ....((.(((.((((((.(..((((((.(((((...))))).))))))).))))))((((((((((........)).))))))))....))).)). ( -41.70) >DroSim_CAF1 9624 96 - 1 UGGAGCGUCGACUGUUUGGUAAGUCCGACGGUCUCAGACUGACGGACUCGGGGCAGCGCUGCUGCUGACUUGAAAGCCGGCAGCGACUGCGAAGCG ....((.(((.((((((.(..((((((.(((((...))))).))))))).))))))((((((((((........)).))))))))....))).)). ( -41.70) >DroEre_CAF1 9464 93 - 1 UGGAGCGUCGACUGUGUGCUAAGUCCGUCGGCUUCAGACUGAUGGACUCGGGGCAGCGCU---GCUGACUUGGAAAACGGCAGCGACUGCGAAGCG ....((.((.........(..(((((((((((....).))))))))))..).((((((((---((((..((....)))))))))).)))))).)). ( -41.70) >DroYak_CAF1 9654 93 - 1 CGGAGCGUCGACUGUGUGCUAAGUCCGACGGUUUCAGACUGACGGACUCGGGGCAGCGCU---GCCGACUUGAAAACCGGCAGCGACUGCGAAGCG ....((.((.........(..((((((.(((((...))))).))))))..).((((((((---((((..........)))))))).)))))).)). ( -42.00) >consensus UGGAGCGUCGACUGUUUGGUAAGUCCGACGGUCUCAGACUGACGGACUCGGGGCAGCGCU___GCUGACUUGAAAGCCGGCAGCGACUGCGAAGCG ....((((((.((((.((((..(((((.(((((...))))).)))))(((((.((((......)))).)))))..)))))))))))).))...... (-26.72 = -27.75 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:24 2006