Locus 4853

Sequence ID 2L_DroMel_CAF1
Location 13,798,333 – 13,798,423
Length 90
Max. P 0.837883
window7700

overview

Window 0

Location 13,798,333 – 13,798,423
Length 90
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 79.09
Mean single sequence MFE -27.05
Consensus MFE -16.46
Energy contribution -15.43
Covariance contribution -1.02
Combinations/Pair 1.39
Mean z-score -1.95
Structure conservation index 0.61
SVM decision value 0.74
SVM RNA-class probability 0.837883
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13798333 90 + 22407834
CACAUUCCAGUAA--CAAUAUA-CCC---CAGGAGCACAACCACUUUGAGGCGCUGCAUAUCCGCUGCGUAGUCCAGCUGGAACUGAUACAGACCA
..(((((((((..--.......-...---..((.......)).....((.((((.((......)).))))..))..))))))).)).......... ( -18.90)
>DroPse_CAF1 4323 93 + 1
CACACUCCAGCCA--CCCCACC-UCCCUGCAGGAGCACAAUCACUUCGAGGCUCUGCAUAUCCGGUGCGUGGUGCAGCUGGAGCUGAUCCAAACCA
..(((((((((((--(((((((-....(((((.(((....((.....)).)))))))).....)))).).))))..))))))).)).......... ( -35.60)
>DroSec_CAF1 4463 90 + 1
CACAUUCCAGUAA--CAAUAUA-CCC---CAGGAGCACAACCACUUCGAGGCGCUGCAUAUCCGCUGCGUAGUUCAGCUGGAACUGAUACAGACCA
..(((((((((..--.......-...---..((((........))))((.((((.((......)).))))...)).))))))).)).......... ( -21.30)
>DroWil_CAF1 5547 93 + 1
CACAUUCCAAUGGACCGACACAGCAG---CAGGAGCACAAUCUUUUCGAGGCAUUGCACAUACGAUGCGUGGUCCAGUUGGAACUCAUACAGACCA
....((((((((((((.((......(---(....))..............((((((......)))))))))))))).))))))............. ( -26.30)
>DroAna_CAF1 4610 90 + 1
CACAUUCCAGUAA--UAGCCAG-CCC---CAGGAGCACAAUCACUUCGAGGCUCUGCAUAUUCGAUGCGUGGUUCAGCUGGAGCUAAUCCAGACAG
....(((((((..--.((((((-((.---..((((........))))..)))...((((.....)))).)))))..)))))))............. ( -24.60)
>DroPer_CAF1 4350 93 + 1
CACACUCCAGCCA--CCCCACC-UCCCUGCAGGAGCACAAUCACUUCGAGGCUCUGCAUAUCCGGUGCGUGGUGCAGCUGGAGCUGAUCCAAACCA
..(((((((((((--(((((((-....(((((.(((....((.....)).)))))))).....)))).).))))..))))))).)).......... ( -35.60)
>consensus
CACAUUCCAGUAA__CAACACA_CCC___CAGGAGCACAAUCACUUCGAGGCUCUGCAUAUCCGAUGCGUGGUCCAGCUGGAACUGAUACAGACCA
....(((((((....................((((........))))..(((..((((.......))))..)))..)))))))............. (-16.46 = -15.43 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:23 2006