| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,793,234 – 13,793,346 |
| Length | 112 |
| Max. P | 0.847845 |
| Location | 13,793,234 – 13,793,346 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 84.28 |
| Mean single sequence MFE | -14.00 |
| Consensus MFE | -13.12 |
| Energy contribution | -13.23 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.847845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13793234 112 - 22407834 CUUACAAAUCUUUAAUGAAUAUGUGUUCGUUAUUCGUUCCCUACCUCUAAUUUUCUAAUACAAAAAUAGUUCCUUAACGCUUGAGAAGCUAAAAAGUUAAAAAAUGUAUUUU ..((((......((((((((....))))))))..................................(((((.((((.....)))).))))).............)))).... ( -11.90) >DroSec_CAF1 9218 94 - 1 CUUACAAAUCUUUAAUGAAUGUUUGAUCUUUAUUCGUUCACUACCU-----UUUCUAAUACAAAAAUAGUUUCUUAUCGCUUGAGAAGCUAAAAAGUUA------------- .........((((..((((((..(((...)))..))))))......-----...............((((((((((.....)))))))))).))))...------------- ( -15.40) >DroSim_CAF1 9917 94 - 1 CUUACAAAUCUUUAAUGAAUAUUUGUUCUUUAUUCGUUCACUACCU-----UUUCUAAUACAAAAAUAGUUUCUUAUCGCUUGAGAAGCUAAAAAGUUA------------- .........((((((((((((.........))))))))........-----...............((((((((((.....)))))))))).))))...------------- ( -14.70) >consensus CUUACAAAUCUUUAAUGAAUAUUUGUUCUUUAUUCGUUCACUACCU_____UUUCUAAUACAAAAAUAGUUUCUUAUCGCUUGAGAAGCUAAAAAGUUA_____________ .........((((((((((((.........))))))))............................((((((((((.....)))))))))).))))................ (-13.12 = -13.23 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:21 2006