Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,782,786 – 13,782,876 |
Length | 90 |
Max. P | 0.582946 |
Location | 13,782,786 – 13,782,876 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -21.57 |
Consensus MFE | -14.32 |
Energy contribution | -14.00 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.21 |
Mean z-score | -1.98 |
Structure conservation index | 0.66 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13782786 90 - 22407834 AGACGCAGGGAAAAGGAGGAACGGCGCGCUGAAAAGAAACGUAAGCGUCGAAAACUCGAUGUUGGUCACGAAAGUUCUGGCGAAGAGGAG .(((((........(......).(((..((....))...)))..))))).....(((..(((..(..((....)).)..)))..)))... ( -24.20) >DroSec_CAF1 11304 90 - 1 AGACGCAGGGAAAAGGAGGAACGUCGCGCUGAAAAGAAACGUAAGCGUCGAAAGCUCGAUGUUGAUCACGAAAGUUCUGGCGAAGAGGAA ...(((..(((....((..(((((((.(((.....((..(....)..))...))).)))))))..))((....))))).)))........ ( -25.90) >DroSim_CAF1 11300 90 - 1 AGACGCAGGGAAAAGGAGGAACGUCGCGCUGAAAAGAAACGUAAGCGUCGAAAGCUCGAUGUUGAUCACGAAAGUUCUGGCGAAGAGGAG ...(((..(((....((..(((((((.(((.....((..(....)..))...))).)))))))..))((....))))).)))........ ( -25.90) >DroEre_CAF1 11617 90 - 1 CAACGCAGACAAAAAAAGGAGCUUCGCGCUGAGAAAAAACGUAAACGUCGAAAGCUUGAUGAUAAACAAAAAAGUUCUGGCGAAGAUGUA .....................((((((.(.(((............((((((....)))))).............))).)))))))..... ( -13.81) >DroYak_CAF1 11486 90 - 1 CGACGUAGGGAAAAGGAGGAACGGCGCGCUGAGAAAAAACGUAAGCGUCGAAAGCUUGACAUUGAUCAAGAAAGUUCUGGCGAAGAUGAG ...(((.((((..........((((((.................))))))....(((((......)))))....)))).)))........ ( -18.03) >consensus AGACGCAGGGAAAAGGAGGAACGUCGCGCUGAAAAGAAACGUAAGCGUCGAAAGCUCGAUGUUGAUCACGAAAGUUCUGGCGAAGAGGAG ...(((...........(((((...(((...........))).((((((((....))))))))..........))))).)))........ (-14.32 = -14.00 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:19 2006