Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,765,695 – 13,765,788 |
Length | 93 |
Max. P | 0.938690 |
Location | 13,765,695 – 13,765,788 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 93.39 |
Mean single sequence MFE | -32.36 |
Consensus MFE | -24.66 |
Energy contribution | -24.42 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.65 |
Structure conservation index | 0.76 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13765695 93 - 22407834 UGGCUUGAUCGCCUCCAACGCACUCGAGAAAUUGGUGGUGGUUUGGCCACAAACUGUUGCACAAAAC-GUGUAACAGGCGG-UCCACCUACUCUC (((((.(((((((.((((..(......)...)))).))))))).)))))....(((((((((.....-)))))))))..((-....))....... ( -35.30) >DroSec_CAF1 28361 90 - 1 UGGCUUGAUCGCCUCCAACGCACUCGAGAAAUUGGU---GGUUCGGCCACAAACUGUUGCACAAAAC-GUGUAACAGGCGG-UCCACCUACUCUC .((...(((((((.(((((.(((.(((....)))))---)))).))........((((((((.....-)))))))))))))-))..))....... ( -31.40) >DroSim_CAF1 31417 90 - 1 UGGCUUGAUCGCCUCCAACGCACUCGAGAAAUUGGU---GGUUCGGCCACAAACUGUUGCACAAAAC-GUGUAACAGGCGG-UCCACCUACUCUC .((...(((((((.(((((.(((.(((....)))))---)))).))........((((((((.....-)))))))))))))-))..))....... ( -31.40) >DroEre_CAF1 30154 91 - 1 UGGCUUGAUCGCCUCCAACGUACUCGAGAAAUUGGU---GGUUUGGCCACAAACUGUUGCACAAAAG-GUGUAACAGGCGGGCACACCUACUCUC .(((......)))............((((....(((---(.....(((.....(((((((((.....-)))))))))...))).))))...)))) ( -30.70) >DroYak_CAF1 31324 92 - 1 UGGCUUGAUCGCCUCCAACGUACUCGAGAAAUUGGU---GGUUCGGCCACAAACUGUUGCACAAGCGUGUGUAACAGGCGGAUCCACCCACUCUC .(((......)))............((((....(((---((.((.(((......(((((((((....)))))))))))).)).)))))...)))) ( -33.00) >consensus UGGCUUGAUCGCCUCCAACGCACUCGAGAAAUUGGU___GGUUCGGCCACAAACUGUUGCACAAAAC_GUGUAACAGGCGG_UCCACCUACUCUC (((((.((((((.......))..((((....))))....)))).)))))....(((((((((......))))))))).................. (-24.66 = -24.42 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:56 2006