Locus 4840

Sequence ID 2L_DroMel_CAF1
Location 13,765,036 – 13,765,134
Length 98
Max. P 0.997184
window7670

overview

Window 0

Location 13,765,036 – 13,765,134
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 94.68
Mean single sequence MFE -24.92
Consensus MFE -24.96
Energy contribution -24.40
Covariance contribution -0.56
Combinations/Pair 1.11
Mean z-score -1.68
Structure conservation index 1.00
SVM decision value 2.81
SVM RNA-class probability 0.997184
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13765036 98 + 22407834
GCAUUCAAUAUGCUUUUGCAGGAAUGUGUUUUUACGUUCCGUGAUGAUCAACCAAUAUGGAUAGCAUAUACCAUUUUUACGGCCAUCGCCUAUCGAGU
..((((....(((....)))((((((((....))))))))((((((..(.......((((.((.....))))))......)..)))))).....)))) ( -24.32)
>DroSec_CAF1 27699 98 + 1
GCAUUCAGUAUGCUUUUGCAGGAAUGUGUUUUUACGUUCCGUGAUGAUCAACCAAUAUGGAUAGCACAUACCAUUUUUACGGCCAUCGCCUAUCGAGU
..((((....(((....)))((((((((....))))))))((((((..(.......((((.((.....))))))......)..)))))).....)))) ( -24.32)
>DroSim_CAF1 30755 98 + 1
GCAUUCAGUAUGCUUUUGCAGGAAUGUGUUUUUACGUUCCGUGAUGAUCAACCAAUAUGGAUAGCACAUACCAUUUUUACGGCCAUCGCCUAUCGAGU
..((((....(((....)))((((((((....))))))))((((((..(.......((((.((.....))))))......)..)))))).....)))) ( -24.32)
>DroEre_CAF1 29442 96 + 1
GCAUUCAUUAUGCUUUUGCAGGAAUGUGUUUUCACGUUCCGUGAUGAUCAACCAAUAUGGAUGCCA--UACCAUUUUUACGGCCAUCGCCCAUCGAGU
..((((....(((....)))((((((((....))))))))((((((..(.......((((......--..))))......)..)))))).....)))) ( -26.12)
>DroYak_CAF1 30649 96 + 1
GCAUUCAAUGUGCUUUUGCAGGAAUGUGUUUUUACGUUCCGUGAUGAUCAACCAAUAUGGAUGCCA--CACCAUUUUUACGGCCAUCGCCCAUCGAGU
..((((.((((((....)))((((((((....))))))))((((((..(.......((((......--..))))......)..)))))).))).)))) ( -25.52)
>consensus
GCAUUCAAUAUGCUUUUGCAGGAAUGUGUUUUUACGUUCCGUGAUGAUCAACCAAUAUGGAUAGCA_AUACCAUUUUUACGGCCAUCGCCUAUCGAGU
..((((....(((....)))((((((((....))))))))((((((..(.......((((.((.....))))))......)..)))))).....)))) (-24.96 = -24.40 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:55 2006