Locus 484

Sequence ID 2L_DroMel_CAF1
Location 1,427,461 – 1,427,556
Length 95
Max. P 0.634017
window776

overview

Window 6

Location 1,427,461 – 1,427,556
Length 95
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 78.72
Mean single sequence MFE -18.63
Consensus MFE -13.90
Energy contribution -13.85
Covariance contribution -0.05
Combinations/Pair 1.14
Mean z-score -1.08
Structure conservation index 0.75
SVM decision value 0.21
SVM RNA-class probability 0.634017
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1427461 95 + 22407834
-----UUACUUUUC----GCUGC-CGUCAAACUGACAAUAUUUAUGAUUCAGAUUGCUCAUUGUAAUUGAUCAUUGUCUGUGGCGAUCAUAAACCAUGGGCCCCA-
-----.........----...((-((((.....)))....((((((((((((((((.(((.......))).))..)))))....))))))))).....)))....- ( -19.60)
>DroVir_CAF1 78107 99 + 1
UCUCGUCUCUGUU-----CAUAA-UGUCAAACUGACAAUAUUUAUGAUUCAGAUUGCUCAUUGUAAUUGAUCAUUGUCUG-AACGAUCAUAAACUAUAAACGAAUG
..((((.......-----.....-((((.....))))...((((((((((((((((.(((.......))).))..)))))-)...))))))))......))))... ( -19.40)
>DroGri_CAF1 63191 92 + 1
UCCAGCUGCUGUU-----UAUAA-UGUCAAACUGACAAUAUUUAUGAUUCAGAUUGCUUAUUGUAAUUGAUCAUUGUCUG-AGCGAUCAUAAACUAUCU-------
..........(((-----(((..-((((.....))))..............(((((((((...((((.....))))..))-))))))))))))).....------- ( -16.70)
>DroWil_CAF1 61249 96 + 1
-----UCAUUCGUU----CAUAA-UGUCAAACUGACAAUAUUUAUGAUCCAGAUUGCUCAUUGUAAUUGAUCAUUGUCUGUGGCGAUCAUAAACUAUAUGCGCAUG
-----......((.----((((.-((((.....))))...((((((((((((((((.(((.......))).))..)))))....)))))))))...)))).))... ( -21.20)
>DroMoj_CAF1 74648 96 + 1
----GUUGCUCUU-----CAUAAAAGUCAAACUGACAAUAUUUAUGAUACAGAUUGCGCAUUGUAAUUGAUCAUUGUCUG-GGCGAUCAUAAACUAUAAACGAAUG
----(((((((..-----((.....(((.....))).......(((((...((((((.....)))))).)))))))...)-))))))................... ( -17.20)
>DroAna_CAF1 46056 99 + 1
-----UUUCUUUUUUGCUUCUGC-CGUCAAACUGACAAUAUUUAUGAUUUAGAUUGCUCAUUGUAAUUGAUCAUUGUCUGUGGCGAUCAUAAACUAUGGGUUCCA-
-----..........((....))-(((((....((((......((((((..((((((.....))))))))))))))))..))))).(((((...)))))......- ( -17.70)
>consensus
_____UUACUCUU_____CAUAA_UGUCAAACUGACAAUAUUUAUGAUUCAGAUUGCUCAUUGUAAUUGAUCAUUGUCUG_GGCGAUCAUAAACUAUAAGCGCAU_
.........................(((.....)))....((((((((((((((((.(((.......))).))..)))))....)))))))))............. (-13.90 = -13.85 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:16 2006