Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,758,169 – 13,758,288 |
Length | 119 |
Max. P | 0.958051 |
Location | 13,758,169 – 13,758,288 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.81 |
Mean single sequence MFE | -21.38 |
Consensus MFE | -19.67 |
Energy contribution | -20.18 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.92 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.958051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13758169 119 + 22407834 AUAAAAAAGCCCUACAA-ACAUUUCAGCAACAACAGCUCUUAAAUGGCUACGACAUCUGCCAUAUGUUUCAAUGAAUGGGCUUAAAAAUGUUUGGAGGCAACACAAAAAGUAAAAAGAAA ........(((...(((-((((((.(((.....((.....((.(((((..........))))).))......)).....)))...)))))))))..)))..................... ( -22.60) >DroSec_CAF1 21789 120 + 1 AUAAAAAAGCCCUACAAAACAUUUCAGCAACAACAGCUCUUAAAUGGCUACGACAUCUGCCAUAUGUUUCAAUGAAUGGGCUUAAAAGUGUUUGGAGGCAACACAAAAAGUAAAAAAAAA ......((((((..((((((((...(((.......))).....(((((..........)))))))))))...))...))))))....(((((.......)))))................ ( -22.60) >DroEre_CAF1 23580 108 + 1 AUAAAAAAGCCCUACAAAACAUUUCAGCAACAACAGCUCUUAAAUGGCUACGACAUCUGCCAUAUGUUUCAAUGAAUGGGCUUAAAAGUGUUUGGAGGCAACACAAAA------------ ......((((((..((((((((...(((.......))).....(((((..........)))))))))))...))...))))))....(((((.......)))))....------------ ( -22.60) >DroYak_CAF1 24996 107 + 1 AUAAAAAA-CCCUACAAAACAUUUCAGCAACAACAGCUCUUAAAUGGCUACGACAUCUGCCAUAUGUUUCAAUGAAUGGGCUUAAAAGUGUUUGGAGGCAACACAAAA------------ ........-.(((...((((((((.(((.....((.....((.(((((..........))))).))......)).....)))...))))))))..)))..........------------ ( -17.70) >consensus AUAAAAAAGCCCUACAAAACAUUUCAGCAACAACAGCUCUUAAAUGGCUACGACAUCUGCCAUAUGUUUCAAUGAAUGGGCUUAAAAGUGUUUGGAGGCAACACAAAA____________ ......((((((..((((((((...(((.......))).....(((((..........)))))))))))...))...)))))).......((((..(....).))))............. (-19.67 = -20.18 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:47 2006