Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,757,970 – 13,758,088 |
Length | 118 |
Max. P | 0.558026 |
Location | 13,757,970 – 13,758,088 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 92.39 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -19.82 |
Energy contribution | -20.30 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.04 |
Mean z-score | -1.60 |
Structure conservation index | 0.77 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558026 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13757970 118 - 22407834 AAGUGUAAAGCUGGCUGCGACAGCUGCAGGUAAGUGGAAUUACCUUGAUUCCGCUUAAUCACAGUCAUAACUAAUGUAAUUUUAAUUUUUAAUUUCAUUUUAACUAUCUAUGUACAUG ..(((((..((((.(((((.....))))).(((((((((((.....)))))))))))....)))).......((((.((((.........)))).)))).............))))). ( -25.30) >DroSec_CAF1 21594 114 - 1 AAGUGUAAAGCUGGCUGCGACAGCUGCAGGUAAGUGGAAUUACCUUGAUUCCGCUUAAUCACAGUCAUAACUAAUGUAAUUUUAAUUUUUAAUUUCAUUUUAACU----ACGCACAUG ..(((((..((((.(((((.....))))).(((((((((((.....)))))))))))....)))).......((((.((((.........)))).)))).....)----))))..... ( -27.00) >DroSim_CAF1 23692 114 - 1 AAGUGUAAAGCUGGCUGCGACAGCUGCAGGUAAGUGGAAUUACCUUGAUUCCGCUUAAUCACAGUCAUAACUAAUGUAAUUUUAAUUUUUAAUUUCAUUUUAACU----ACGCACAUG ..(((((..((((.(((((.....))))).(((((((((((.....)))))))))))....)))).......((((.((((.........)))).)))).....)----))))..... ( -27.00) >DroEre_CAF1 23385 114 - 1 AAGUGUAAAGCUGGCUGCGACACCUGCAGGCAAGUGGAAUUACCUUGAUUACGCUUGAUCAUGGUCAUAACUAAUGUAAUUUUAAUUUUUAAUAUCAUGUUGACU----AUGUACAUG ((((((((.((((.(((((.....))))).).)))((.....))....))))))))...((((((((.........(((.........))).........)))))----)))...... ( -24.77) >DroYak_CAF1 24801 114 - 1 AAGUGUAAAGCUGGUGGCGACAGCUUCAGGUAAGUGGAAUUACCUUGAUUCCGCUUAAUCACACUCAUAACUAAUGUAAUUUUAAUUUUUAAUUUCAUUUUAACG----ACGUACAUA .(((((.((((((.......))))))..(((((((((((((.....)))))))))).))))))))........(((((...((((..............))))..----...))))). ( -25.44) >consensus AAGUGUAAAGCUGGCUGCGACAGCUGCAGGUAAGUGGAAUUACCUUGAUUCCGCUUAAUCACAGUCAUAACUAAUGUAAUUUUAAUUUUUAAUUUCAUUUUAACU____ACGUACAUG ..(((((.(((((.......)))))...(((((((((((((.....))))))))))).))....................................................))))). (-19.82 = -20.30 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:46 2006