Locus 4833

Sequence ID 2L_DroMel_CAF1
Location 13,757,699 – 13,757,806
Length 107
Max. P 0.519548
window7660

overview

Window 0

Location 13,757,699 – 13,757,806
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.29
Mean single sequence MFE -18.68
Consensus MFE -10.18
Energy contribution -10.43
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -2.74
Structure conservation index 0.54
SVM decision value -0.03
SVM RNA-class probability 0.519548
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13757699 107 - 22407834
A------CAACUACCAA-AAACGACAAAGAAACCUCAGCGGACAUCGACACGUU---AUAAAUUUAAAUUUAUGUUGCCAUUUAAAAUGGCACAAAAAUU--AC-GAUAAAUUUAUAACC
.------..........-..............((.....))..........(((---((((((((((((((.(((.(((((.....)))))))).)))))--..-..)))))))))))). ( -19.30)
>DroSec_CAF1 21313 104 - 1
----------CUACCAAAAAACGACAAAGAAACCUCAGCGGACAUCGACACGUU---AUAAAUUUAAAUUUAUGUUGCCAUUUAAAAUGGCACAAAAAUU--AC-GAUAAAUUUAUAACC
----------......................((.....))..........(((---((((((((((((((.(((.(((((.....)))))))).)))))--..-..)))))))))))). ( -19.30)
>DroAna_CAF1 42051 113 - 1
AGCUUUUCCACGUCCA--UAAUCUCAAAGCGGC--UAACGGAUAUCAACGAGUA---AUAAAUUUGAAUUUAUGCUGCCAUUUAAAGUGGCAGAAAAAUUUUACAAAUAAAUUUAUAACC
..............((--(((..(((((...((--(..((........))))).---.....)))))..)))))(((((((.....)))))))..((((((.......))))))...... ( -19.10)
>DroSim_CAF1 23417 104 - 1
----------CUACCAAAAAACGACAAAGAAACCUCAGCGGACAUGGACACGUU---AUAAAUUUAAAUUUAUGUUGCCAUUUAAAAUGGCACAAAAAUU--AC-GAUAAAUUUAUAACC
----------...(((.....((.(..((....))..)))....)))....(((---((((((((((((((.(((.(((((.....)))))))).)))))--..-..)))))))))))). ( -21.50)
>DroEre_CAF1 23118 107 - 1
A------UAACUACCAA-AAAUGACAAAGAAACCUCAGAGGACAUCGACACGUU---AUAAAUUUAAAUGUUUGUUGCCAUUUAAAAUGGCACGAAAAUU--AC-GAUAAAUUUAUAACC
.------..........-..............((.....))..........(((---((((((((((((.(((((.(((((.....)))))))))).)))--..-..)))))))))))). ( -19.30)
>DroYak_CAF1 24514 110 - 1
U------UAACUACCAA-AAACAACAAACAAACCUCAGUGGACAUCGACACGUUAGUAUAAAUUUAAAUGUAUGUUGCCAUUUAAAAAGGCACAAAAAUU--AC-GAUAAAUUUAUAACC
.------..........-...................(((........))).....((((((((((..(((((((.(((.........)))))).....)--))-).))))))))))... ( -13.60)
>consensus
A_______AACUACCAA_AAACGACAAAGAAACCUCAGCGGACAUCGACACGUU___AUAAAUUUAAAUUUAUGUUGCCAUUUAAAAUGGCACAAAAAUU__AC_GAUAAAUUUAUAACC
.........................................................((((((((((((((.((.((((((.....)))))))).))))).......))))))))).... (-10.18 = -10.43 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:45 2006