Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,755,934 – 13,756,049 |
Length | 115 |
Max. P | 0.880623 |
Location | 13,755,934 – 13,756,049 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 80.80 |
Mean single sequence MFE | -22.38 |
Consensus MFE | -11.50 |
Energy contribution | -12.98 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.12 |
Mean z-score | -2.41 |
Structure conservation index | 0.51 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13755934 115 + 22407834 UUUACU--CAA--AGAAAAAAGAGCUGCUGUUGGUGGAAAAUGGAAACUUUUACCAUUGGACCACAAUAACCAGCUAAAUAACAAGCUCUUGGAAAACCAGGAAAACAGCCAACUAUUU ......--...--........(.((((..((((((((((((.(....))))).))((((.....)))).))))))............((((((....))))))...)))))........ ( -25.30) >DroSec_CAF1 19526 114 + 1 UUGACU--CAA--A-AAAAAAGCGAGGCUGUUGGUGGAAAAUGGAAACUUUUACCAUUGGACCACAAUAACCAGCUAAAUAACAAGCUCUUGGAAAACCAGGACAACAGCCAACUAUUU ......--...--.-..........((((((((((((..(((((.........)))))...))))........(((........)))((((((....))))))))))))))........ ( -32.20) >DroSim_CAF1 21637 114 + 1 UUUACU--CAA--A-AAAAAAGCGAGGUUGUUGGUGGAAAAUAGAAACUUUUACCAUUGGACCACAAUAACCAGCUAAAUAACAAGCCCUUGGAAAACCAGGACAACAGCCAACUAUUU ......--...--.-..........((((((((((((....((((....))))((...)).))))........(((........))).(((((....))))).))))))))........ ( -22.50) >DroEre_CAF1 21409 104 + 1 CUUAUUACCAGAUA-AUU-------UGCUCUUGGUAA-------AAACUUGUACCAUUGGACCACCAUAACCAGCUAAAUAACAAGAUCCUGGAAACCCAGGACAACAGGCAACUAUUU ....((((((((..-...-------...)).))))))-------...(((((....((((..........)))).......))))).((((((....))))))....((....)).... ( -21.10) >DroYak_CAF1 22736 100 + 1 UUUACU--CAA--A-AAA-------AGCUCUCGGUGG-------AAACUUUUACUAUUGGACCACAAUAACAAGCUAAAUAACAACCUCUUGGAUAACCAGCACAACAGCAAACUAUUU ......--...--.-...-------.(((...((((.-------...)......(((((.....)))))...............)))..((((....))))......)))......... ( -10.80) >consensus UUUACU__CAA__A_AAAAAAG_G_GGCUGUUGGUGGAAAAU_GAAACUUUUACCAUUGGACCACAAUAACCAGCUAAAUAACAAGCUCUUGGAAAACCAGGACAACAGCCAACUAUUU ..........................(((((((((((........................))))......................((((((....)))))))))))))......... (-11.50 = -12.98 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:40 2006