Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,425,120 – 1,425,236 |
Length | 116 |
Max. P | 0.525810 |
Location | 1,425,120 – 1,425,236 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 91.03 |
Mean single sequence MFE | -37.66 |
Consensus MFE | -29.42 |
Energy contribution | -29.30 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.43 |
Structure conservation index | 0.78 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1425120 116 + 22407834 AGAACGAGAUUCGUUUUAGCCAACAACCACUGUACCCAUCCGGGAAAAAGGGACAGAUUUUAGCAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU ((((((.....)))))).((((....((.((...(((....)))....)))).(((((.....(((((((....((....))...)))))))((((.....)))))))))..)))) ( -39.00) >DroSec_CAF1 43219 116 + 1 AGAACCAGAUUCGUUGUAGCCAUCAACCACUGUACCCAUCCGGAAAAAAGGGACAGAUUUUAGCAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU .....((((((((((...((((.(.....((((.(((............)))))))......((..((((((.....))))))...))).))))..)))))....)))))...... ( -34.00) >DroSim_CAF1 43450 116 + 1 AGAACCAGAUUCGUUGUAGCCAUCAACCACUGUACCCAUCCGGGAAAAAGGGACAGAUUUUAGCAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU ..................(((((...((.((...(((....)))....)))).(((((.....(((((((....((....))...)))))))((((.....))))))))).))))) ( -35.30) >DroEre_CAF1 43124 116 + 1 AAAGCAGGAUUCGUCUUAGCGAUCGACCACCGUACCGAUCUGCGAAAGAGGGACAGAUUUGAGUAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU .........(((.((((.(((((((..........))))).))..)))).)))(((((.....(((((((....((....))...)))))))((((.....)))))))))...... ( -35.40) >DroYak_CAF1 44209 116 + 1 AGAGCAAGGUUCGUCUUAGCGAUGAGCCACCGUACCCAACUGGGAAAGAGGGACAGAUUUGAGCAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU .......((((((((.....))))))))(((((.(((....))).........(((((.....(((((((....((....))...)))))))((((.....))))))))).))))) ( -44.60) >consensus AGAACAAGAUUCGUUUUAGCCAUCAACCACUGUACCCAUCCGGGAAAAAGGGACAGAUUUUAGCAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU .........................((((.....(((............))).(((((.....(((((((....((....))...)))))))((((.....)))))))))..)))) (-29.42 = -29.30 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:15 2006