Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,745,987 – 13,746,087 |
Length | 100 |
Max. P | 0.631463 |
Location | 13,745,987 – 13,746,087 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.36 |
Mean single sequence MFE | -22.18 |
Consensus MFE | -15.09 |
Energy contribution | -15.87 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.15 |
Mean z-score | -1.31 |
Structure conservation index | 0.68 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13745987 100 + 22407834 -----CCCACACCCACAAACG---------------CUGCUCCAUCGUUGUCCGUAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAAGUCGAGUCAAUCAA -----................---------------..((((.....(((((((....)))))))((((((.....)))(((((((....)))))))...)))......))))....... ( -22.80) >DroSec_CAF1 9576 100 + 1 -----CCCACACCCACGAACA---------------CUGCUCCAUCGUUGUCCGUAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAAGUCGAGUCAAUCAA -----................---------------..((((.....(((((((....)))))))((((((.....)))(((((((....)))))))...)))......))))....... ( -22.80) >DroAna_CAF1 21615 120 + 1 CUGCCCUCCCACCCCGACACAGUUAUAUGCCCCCGACAUCUAUGUCGUUGUCUGUGUUUGGACAAGUUAUCGUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAGGCCAAGUCAAUCAA ..(((...((..((.(((((((......((...(((((....)))))..))))))))).)).................((((((((....))))))))..))...)))............ ( -28.10) >DroSim_CAF1 11293 100 + 1 -----CCCACACCCACGAACA---------------CUGCUCCAUCGUUGUCCGUAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAGAGGCCAAGUCGAGUCAAUCAA -----................---------------..((((.....(((((((....)))))))((((((.....)))(((((((....)))))))...)))......))))....... ( -22.80) >DroEre_CAF1 11215 79 + 1 -----CCCACACC-------A---------------UUGC--------------UAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAAGUCGAGUCAAUCAA -----........-------(---------------(((.--------------.((((((....((((((.....)))(((((((....)))))))...)))....))))))))))... ( -15.20) >DroYak_CAF1 12234 94 + 1 -----CCCACACCC------A---------------UUCCUCCAUCGUUGUCCGUAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAAGUCGAGUCAAUCAA -----.........------.---------------...(((.....(((((((....)))))))((((((.....)))(((((((....)))))))...)))......)))........ ( -21.40) >consensus _____CCCACACCCAC_AACA_______________CUGCUCCAUCGUUGUCCGUAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAAGUCGAGUCAAUCAA ...............................................(((((((....)))))))((((((.....)))(((((((....)))))))...)))................. (-15.09 = -15.87 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:19 2006