Locus 4820

Sequence ID 2L_DroMel_CAF1
Location 13,743,292 – 13,743,406
Length 114
Max. P 0.572227
window7630

overview

Window 0

Location 13,743,292 – 13,743,406
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.25
Mean single sequence MFE -34.64
Consensus MFE -20.27
Energy contribution -21.82
Covariance contribution 1.55
Combinations/Pair 1.31
Mean z-score -1.74
Structure conservation index 0.59
SVM decision value 0.08
SVM RNA-class probability 0.572227
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13743292 114 - 22407834
ACUGGCUGUUUG--UGAUUGUUCCUGUCUCUUUCAGGCUGUCCAACCGAAAGGAAUUGGAUGGAAAAA----GUGAGCAGUCGGACAGACGACUAUCAGGGCCAUCAGCAGCAGUUGCAA
((((.((((...--((((.(..((((((.((((....((((((((((....))..))))))))..)))----).))..(((((......)))))..))))..)))))))))))))..... ( -39.70)
>DroSec_CAF1 6936 114 - 1
ACUGGCUGUUUG--UGAUUGUUCCUGUCUCUUUCAGGCUGUCCAUCCGAAAGGAAUUGGAUGGAAAAA----GUGAGCAGUCGGACAGACGGCUAUCAGGGCCAUCAGCAGCAGUCGCAA
...(((((((.(--((((((((((((.......)))(((.(((((((((......)))))))))...)----)))))))))).....((.((((.....)))).)).))))))))).... ( -43.50)
>DroAna_CAF1 19267 116 - 1
CAUGAUUGCUAGGAUACUUGAUUC----UGGUCCAAACGAGCCAUCUGAAAAUAAUUGAAUUGAAAAAAGAAACCAACAGCCGGAGAAACGACAAUCGGAACUAUCAACAUCAGUUGCAA
.....((((...(((..(((((..----(((..(....)..)))(((((...........((....))...........(.((......)).)..)))))...))))).)))....)))) ( -14.90)
>DroSim_CAF1 8665 114 - 1
ACUGGCUGUUUG--UGAUUGUUCCUGUCUCUUUCAGGCUGUCCAACCGAAAGGAAUUGGAUGGAAAAA----GUGAGCAGUCGGACAGACGACUAUCAGGGCCAUCAGCAGCAGUUGCAA
((((.((((...--((((.(..((((((.((((....((((((((((....))..))))))))..)))----).))..(((((......)))))..))))..)))))))))))))..... ( -39.70)
>DroEre_CAF1 8571 100 - 1
ACUGGCUGCUUG--UGAUUGUUCCU--------------GUCCAACCGAAAGGAAUUGGAUGGAAAAA----GUCAGCAGCGGGACAGACGACUAUCAGGGCCAUCAGCAUCAGUUGCAA
.((.((((((..--.((((.((((.--------------((((((((....))..))))))))))..)----))))))))).))...(.(((((......((.....))...)))))).. ( -33.00)
>DroYak_CAF1 8966 114 - 1
ACUGGCUGUUUG--UGAUUGUUUCUGUCUAUUUCAGACUGUCCAACCGAAAGGAAUCGGAUGGAAAAA----GUCAGCAGCCGGACAGACGACUAUCAGGGCCAUCAGCAGCAGUUGCAA
((((((((.((.--((((.((((((((((......((((.((((.((((......)))).))))...)----))).......))))))).))).)))).))....))))..))))..... ( -37.02)
>consensus
ACUGGCUGUUUG__UGAUUGUUCCUGUCUCUUUCAGGCUGUCCAACCGAAAGGAAUUGGAUGGAAAAA____GUCAGCAGCCGGACAGACGACUAUCAGGGCCAUCAGCAGCAGUUGCAA
.(((((((((............((((.......))))(((((((.((....))...)))))))............))))))))).....(((((......((.....))...)))))... (-20.27 = -21.82 +   1.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:16 2006