Locus 4819

Sequence ID 2L_DroMel_CAF1
Location 13,742,469 – 13,742,569
Length 100
Max. P 0.713851
window7629

overview

Window 9

Location 13,742,469 – 13,742,569
Length 100
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 73.46
Mean single sequence MFE -23.90
Consensus MFE -14.02
Energy contribution -17.18
Covariance contribution 3.16
Combinations/Pair 1.18
Mean z-score -1.64
Structure conservation index 0.59
SVM decision value 0.38
SVM RNA-class probability 0.713851
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13742469 100 - 22407834
GGGUGUGGCCGUUGGCUAUAAGUUGGCUAAUGAUUGUUUCGGUGUGAUUAUAUCGCAUUUGGGACUAACUAACAUUGAAAUAUCUAUAUCUAA--------UGUCAGU
((((((((.(((((((((.....)))))))))..(((((((((((.......((.(....).)).......))))))))))).))))))))..--------....... ( -28.44)
>DroSec_CAF1 6127 93 - 1
GGGUGUGGCCGUUGGCUAUAAGUUGGCUAAUGAUUGUUUCGCAGUGAUUAAAUCGCAUAUGGGACUAACUAACAUUGAAGCUUAUAUAUCAUA---------------
.((((((..(((((((((.....)))))))))...(((((...(((((...)))))...(((......))).....)))))...))))))...--------------- ( -22.70)
>DroSim_CAF1 7864 93 - 1
GGGUGUGGCCGUUGGCUAUAAGUUGGCUAAUGAUUGUUUCGCAGUGAUUAAAUCGCAUAUGGGACUAACUAAAAUUGAAGCAUAUAUAUCAUA---------------
.((((((..(((((((((.....)))))))))..((((((...(((((...)))))...(((......))).....))))))..))))))...--------------- ( -23.90)
>DroEre_CAF1 7798 108 - 1
GGGUGUGGCUGUUGGCUAUAUGUUGGCUAAUGAUGGUUUCGGUGUGAUUAAAUCGCACAUGUGACUAACUAACAUUGAAAUAUAUACAUGUAAUGGCUUAAUGUCUGU
(((..(((((((((((((.....))))))))....((((((((((.......((((....)))).......)))))))))).............))))..)..))).. ( -26.44)
>DroYak_CAF1 8158 76 - 1
GGGUGUAGUCGA-----------UGGCUAAUGAUUGUUUCGGUGUGAUUAUAUCGCAAAUGUGACUAAAUAACAUCGAAA---------------------UGUCUGU
.....((((...-----------..))))..(((.((((((((((.(((...((((....))))...))).)))))))))---------------------))))... ( -18.00)
>consensus
GGGUGUGGCCGUUGGCUAUAAGUUGGCUAAUGAUUGUUUCGGUGUGAUUAAAUCGCAUAUGGGACUAACUAACAUUGAAACAUAUAUAUCAAA________UGUC_GU
.((((((..(((((((((.....)))))))))...((((((((((.......((.(....).)).......))))))))))...)))))).................. (-14.02 = -17.18 +   3.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:15 2006