Locus 4815

Sequence ID 2L_DroMel_CAF1
Location 13,738,712 – 13,738,817
Length 105
Max. P 0.658087
window7616

overview

Window 6

Location 13,738,712 – 13,738,817
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.65
Mean single sequence MFE -23.13
Consensus MFE -13.42
Energy contribution -14.32
Covariance contribution 0.89
Combinations/Pair 1.20
Mean z-score -1.82
Structure conservation index 0.58
SVM decision value 0.26
SVM RNA-class probability 0.658087
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13738712 105 + 22407834
GAACAAGAUGAAAACAAAAAUCUGUUAUUCAGAUUGACUUGGC--------------ACA-AAAGCCGACCUCGGCCAAAAAGCUUGUACAUAUAUAUGUAUGUAUUCAGUUUUUCCUUG
...((((.......(((.((((((.....))))))...)))..--------------...-...((((....))))..(((((((.((((((((....))))))))..))))))).)))) ( -25.20)
>DroSec_CAF1 2551 105 + 1
GAACAAGAUGAAAACAAAAAUCUGUUAUUCAGAUUGACUUGGC--------------ACA-AAAGCCGACCUCGGCCAAAAAGCUUGUACAUAUAUAUGUAUGUAUUCAGUUUUUCUUUG
...(((..((((((((......)))).))))..))).......--------------.((-((.((((....))))..(((((((.((((((((....))))))))..))))))).)))) ( -24.20)
>DroAna_CAF1 14546 111 + 1
CAAGAUGAUGGCAACA-AAAUCUGUUAUUCAGAUUGACUUGCCACAUUUAACAUGCCACA-AAGGCCUACCUCGGCG-----CCUCGAACGAAAACGCGUA--UUUGCAGUUUCUCCUUU
..(((((.((((((..-.((((((.....))))))...))))))))))).....(((...-.(((....))).))).-----........((((..(((..--..)))..))))...... ( -28.20)
>DroSim_CAF1 4208 105 + 1
GAACAAGAUGAAAACAAAAAUCUGUUAUUCAGAUUGACUUGGC--------------ACA-AAAGCCGACCUCGGCCAAAAAGCUUGUACAUAUAUAUGUAUGUAUUCAGUUUUUCUUUG
...(((..((((((((......)))).))))..))).......--------------.((-((.((((....))))..(((((((.((((((((....))))))))..))))))).)))) ( -24.20)
>DroEre_CAF1 4095 103 + 1
GAACAAGAUGAAAACAAAAAUCUGUUAUUCAGAUUGACUUGGC--------------ACA-AAAGCCGACCUCGGCCAAAAAGCAUGUAUAUAUACA--UAUAUAUUCAGUUUUUCUUUG
.....(((.((((((...((((((.....))))))((....((--------------...-...((((....))))......))((((((((....)--))))))))).)))))).))). ( -19.80)
>DroYak_CAF1 4246 96 + 1
GAACAAGAUGAAAACCAAAAUCUGUUAUUCAGAUUGACUUGGC--------------ACACAAAGGCGACCUCAGCCAAAUAGCGUGUACACG----------AUUUCAGUUUUUCUUUG
(((.(((.(((((.((((((((((.....))))))...)))).--------------.......(((.......)))......(((....)))----------.))))).)))))).... ( -17.20)
>consensus
GAACAAGAUGAAAACAAAAAUCUGUUAUUCAGAUUGACUUGGC______________ACA_AAAGCCGACCUCGGCCAAAAAGCUUGUACAUAUAUAUGUAUGUAUUCAGUUUUUCUUUG
...((((..((((((...((((((.....))))))....(((......................((((....))))..........(((((((......)))))))))))))))).)))) (-13.42 = -14.32 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:03 2006