Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,735,383 – 13,735,495 |
Length | 112 |
Max. P | 0.551167 |
Location | 13,735,383 – 13,735,495 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.38 |
Mean single sequence MFE | -24.72 |
Consensus MFE | -9.22 |
Energy contribution | -10.26 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.28 |
Mean z-score | -1.71 |
Structure conservation index | 0.37 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.551167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13735383 112 + 22407834 UAAACCGCUUCAAGCUGUUUGCUCUGCACUUUUUAAUAGUCGCAGAUUGUACUCCAUACUGAGAUCACUGUGACAAAU-------GUAAUGUAUUUUGCAAAAUAAAUAUAUAG-GUAUU ...(((((....(((.....)))..))...........(((((((..((..(((......)))..)))))))))....-------...((((((((........)))))))).)-))... ( -22.40) >DroAna_CAF1 3872 110 + 1 UAAAACGCCGCCAGAUGUUUGCGCUGCAGUUUUUAAUAGUCGUGGAUUGGAGUUAGUUUUACCUUCAGUG--AAAAAU-------AUUAAUUCUUU-AAUCCAUAGAGUUAUAAUUUAUU .(((((((.(((((....))).)).)).)))))..(((((((((((((((((((((((((((.....)))--))....-------)))))))))..-))))))).)).))))........ ( -22.00) >DroSim_CAF1 944 111 + 1 UAAACCGCUUCAAGCUGUUUGCUCUGCACUUUUUAAUAGUCGCAGAUUGUACUCCAUACUGAGAUCACUGUGA-AAAU-------CGAAUGUAUUUUGAAAAAUAAGUAUAUAU-GUAUU (((((.((.....)).))))).((((((((.......))).))))).((((((.((((.((....)).)))).-...(-------((((.....)))))......))))))...-..... ( -20.30) >DroEre_CAF1 813 99 + 1 UAAACCGCUUCAAGCUGUUUGCUCUGCACUUUUUAAUAGUCGCGGAUUGUACUCCGUACUGAGUUCACUGCGACAAAU-------GAAGUGUAUUU-------------GAAAG-GUAUU ...(((..(((((((.....))..((((((((......(((((((..((.((((......)))).)))))))))....-------)))))))).))-------------))).)-))... ( -30.50) >DroYak_CAF1 636 106 + 1 UAAACCGCUUCAAGCUGUUUGCUCUGCACUUUUUAAUAGUCGCGGAUUGUACACCAUACUGAGUUCACUGUGACAAAAACUGUUAAAAAUGAAUUC-------------AAUGG-GUAUU (((((.((.....)).))))).((((((((.......))).)))))..((((.((((..((((((((...(((((.....)))))....)))))))-------------)))))-)))). ( -28.40) >consensus UAAACCGCUUCAAGCUGUUUGCUCUGCACUUUUUAAUAGUCGCGGAUUGUACUCCAUACUGAGUUCACUGUGACAAAU_______AAAAUGUAUUU______AUA____UAUAG_GUAUU ......((....(((.....)))..))...........(((((((..((.((((......)))).))))))))).............................................. ( -9.22 = -10.26 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:57 2006