Locus 4811

Sequence ID 2L_DroMel_CAF1
Location 13,734,018 – 13,734,121
Length 103
Max. P 0.655038
window7609

overview

Window 9

Location 13,734,018 – 13,734,121
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.42
Mean single sequence MFE -38.17
Consensus MFE -27.51
Energy contribution -27.43
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -1.23
Structure conservation index 0.72
SVM decision value 0.25
SVM RNA-class probability 0.655038
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13734018 103 - 22407834
CCA----GGAUCUUCGCCAGGAGCUGCCG----UGUGCAGCUUGGG---------GGCUUGGGAGCGUGUCAGAGUUUGCAUUAGAGCCUGACAUGCCUGCAGGGACAAUGGCAGGAACA
...----...((((.((((.(((((((..----...)))))))..(---------..((((.(.(((((((((.((((......))))))))))))).).))))..)..))))))))... ( -42.70)
>DroPse_CAF1 113810 105 - 1
-------GU------UUUAUAAGCAGCCGGUGAGGUGCAGUU-GGGUGGAGGGGAGGGAUGGGAGCGUGUCAGGGUUUGCAUUAGAGCCUGACAUGCCUGCAGGGACAAUGGCAGGCAG-
-------..------.......(((.((.....))))).((.-.(((..........((((.((((.(....).)))).))))...)))..)).(((((((..........))))))).- ( -32.12)
>DroSim_CAF1 89199 106 - 1
CCAGGCAGGAUCUUCUCCAGGAGCUGCCG----UGUGCAGCU-GGG---------GGCUUGGGAGCGUGUCAGAGUUUGCAUUAGAGCCUGACAUGCCUGCAGGGACAAUGACAGGAACA
((..(((((.....((((..(((((.(((----.(.....))-)).---------))))).))))((((((((.((((......)))))))))))))))))..))............... ( -42.50)
>DroEre_CAF1 91607 102 - 1
CCA----GGAUCCUCUCCAGGAGCUGCCG----UGUGCAGCU-GGG---------GGCUUGGGAGCGUGUCAGAGUUUGCAUUAGAGCCUGACAUGCCUGCAGGGACAAUGGCAGGCACA
(((----((.(((((......((((((..----...))))))-)))---------)))))))....(((((((.((((......)))))))))))((((((..........))))))... ( -42.90)
>DroYak_CAF1 92095 102 - 1
CCA----GGAUCUUCUCCAGGAGCUGCCG----UGUGCAGCU-GGG---------GGCUUGGGAGCGUGUCACAGUUUGCAUUAGAGCCUGACAUGCCUGCAGGGACAAUGGCAGGAACA
(((----((....((((((...(((((..----...))))))-)))---------)))))))..((((((((..((((......)))).))))))))((((..........))))..... ( -35.20)
>DroPer_CAF1 114542 105 - 1
-------GU------UUUAUAAGCAGCCGGUGAGGUGCAUUU-GGGUGGAGGGGAGGGAUGGGAGCGUGUCAGGGCUUGCAUUAGAGCCUGACAUGCCUGCAGGGACAAUGGCAGGCAG-
-------..------.......(((.((.....)))))....-..(((..(((....((((.((((.(....).)))).))))....)))..)))((((((..........))))))..- ( -33.60)
>consensus
CCA____GGAUCUUCUCCAGGAGCUGCCG____UGUGCAGCU_GGG_________GGCUUGGGAGCGUGUCAGAGUUUGCAUUAGAGCCUGACAUGCCUGCAGGGACAAUGGCAGGAACA
................((((((((((((......).))))))...............)))))..(((((((((.((((......)))))))))))))((((..........))))..... (-27.51 = -27.43 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:56 2006