Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,730,348 – 13,730,448 |
Length | 100 |
Max. P | 0.915614 |
Location | 13,730,348 – 13,730,448 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -30.85 |
Consensus MFE | -21.78 |
Energy contribution | -22.74 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.10 |
Mean z-score | -3.52 |
Structure conservation index | 0.71 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13730348 100 + 22407834 AAAAACGGCAUCAAUUUUUCCGCUUCACCCUUCGCUUUAGCCAACCCACUCGAAAAACUCAGCGAAUGGAACAAGGCGUGCUGGAA--AAAUUGCUGCUCAU ......((((.(((((((((((...(((((((.((....))....(((.(((..........))).)))...)))).))).)))))--)))))).))))... ( -28.50) >DroSec_CAF1 87616 100 + 1 AAAAACGGCAGCAAUUUUUCCGCUUCACCCUUCGCUUUAGCCGCCCCACUGGAAAAACUCAGCGAAUGGAACAGAGCGUGCUGGAA--AAAUUGCUGCUCAU ......(((((((((((((((((.........((((((..(((...(.((((......)))).)..)))...)))))).)).))))--)))))))))))... ( -35.10) >DroSim_CAF1 85435 100 + 1 AAAAACGGCAGCAAUUUUUCCGCUUCACCCUUCGCUUUAGCCGCCCCACUGGAAAAACUCAGCGAAUGGAACAGAGCGUGCUGGAA--AAAUUGCUGCUCAU ......(((((((((((((((((.........((((((..(((...(.((((......)))).)..)))...)))))).)).))))--)))))))))))... ( -35.10) >DroEre_CAF1 87964 102 + 1 AAAAACGGCAGCAAUUUUUCCGCAUCACCCUUCGCUUUAGCCACCCCACUGGAAAAACUCAGCCAAUGGAACAAAACGAGCUCGAAAAAAAUUGCUGCUCAU ......((((((((((((((.((.((.......((....))....(((.(((..........))).)))........))))..))..))))))))))))... ( -23.90) >DroYak_CAF1 88296 100 + 1 AAAAACGGCAGCAAUUUUUCCGCUUCACCCUUCGCUUUGGCAACGCCACUCGAAAAACUCAGCCAAUGGAGCCAAGCGUGCUGGAA--AAAUGGCUGCUCAU ......((((((.(((((((((...(((.(((.((((((((....................))))...)))).))).))).)))))--)))).))))))... ( -31.65) >consensus AAAAACGGCAGCAAUUUUUCCGCUUCACCCUUCGCUUUAGCCACCCCACUGGAAAAACUCAGCGAAUGGAACAAAGCGUGCUGGAA__AAAUUGCUGCUCAU ......(((((((((((((((((.........((((((..(((.....((((......))))....)))...)))))).)).))))..)))))))))))... (-21.78 = -22.74 + 0.96)
Location | 13,730,348 – 13,730,448 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -38.04 |
Consensus MFE | -26.84 |
Energy contribution | -27.12 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.14 |
Mean z-score | -3.35 |
Structure conservation index | 0.71 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893782 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13730348 100 - 22407834 AUGAGCAGCAAUUU--UUCCAGCACGCCUUGUUCCAUUCGCUGAGUUUUUCGAGUGGGUUGGCUAAAGCGAAGGGUGAAGCGGAAAAAUUGAUGCCGUUUUU (((.(((.((((((--((((.((.((((((..((((((((..........))))))))...((....))..))))))..)))))))))))).)))))).... ( -34.40) >DroSec_CAF1 87616 100 - 1 AUGAGCAGCAAUUU--UUCCAGCACGCUCUGUUCCAUUCGCUGAGUUUUUCCAGUGGGGCGGCUAAAGCGAAGGGUGAAGCGGAAAAAUUGCUGCCGUUUUU (((.((((((((((--((((.((.(((((((((((....((((........))))))))).((....))..))))))..))))))))))))))))))).... ( -40.70) >DroSim_CAF1 85435 100 - 1 AUGAGCAGCAAUUU--UUCCAGCACGCUCUGUUCCAUUCGCUGAGUUUUUCCAGUGGGGCGGCUAAAGCGAAGGGUGAAGCGGAAAAAUUGCUGCCGUUUUU (((.((((((((((--((((.((.(((((((((((....((((........))))))))).((....))..))))))..))))))))))))))))))).... ( -40.70) >DroEre_CAF1 87964 102 - 1 AUGAGCAGCAAUUUUUUUCGAGCUCGUUUUGUUCCAUUGGCUGAGUUUUUCCAGUGGGGUGGCUAAAGCGAAGGGUGAUGCGGAAAAAUUGCUGCCGUUUUU (((.(((((((((((((.((.((((.....(..(((((((..........)))))))..).((....))...))))....)))))))))))))))))).... ( -35.10) >DroYak_CAF1 88296 100 - 1 AUGAGCAGCCAUUU--UUCCAGCACGCUUGGCUCCAUUGGCUGAGUUUUUCGAGUGGCGUUGCCAAAGCGAAGGGUGAAGCGGAAAAAUUGCUGCCGUUUUU (((.(((((.((((--((((..(((.(((.(((...(((((...(((........)))...)))))))).))).)))....)))))))).)))))))).... ( -39.30) >consensus AUGAGCAGCAAUUU__UUCCAGCACGCUUUGUUCCAUUCGCUGAGUUUUUCCAGUGGGGUGGCUAAAGCGAAGGGUGAAGCGGAAAAAUUGCUGCCGUUUUU (((.((((((((((..((((.((.((((((((((((((..............)))))))).((....))..))))))..))))))))))))))))))).... (-26.84 = -27.12 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:53 2006