Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,727,117 – 13,727,212 |
Length | 95 |
Max. P | 0.983849 |
Location | 13,727,117 – 13,727,212 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 80.88 |
Mean single sequence MFE | -33.42 |
Consensus MFE | -22.41 |
Energy contribution | -23.09 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.04 |
Mean z-score | -2.58 |
Structure conservation index | 0.67 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13727117 95 + 22407834 GGGCACGUUGGCGGAGAGAGGAAACGAUGGCGAAGGCGAGGUAAAGGCCUCGAGUGCCGCAAGAGCACUUAAUACUAAUUAGCUUUGCGCCUACG .....(((.((((.((((.(....)....((....))(((((....)))))(((((((....).))))))............)))).)))).))) ( -37.30) >DroSec_CAF1 84371 95 + 1 GGGCAUAGUGGUGCAGAGAGGGGACAAGGGCGAAGGCGAGGGAAAGGCCUCGAGUGCCGCAAGAGCACUUAAUACUAAUUAGCUUUGCGCCUACG .......(((((((((((.(....)..((((....))((((......))))(((((((....).))))))....))......))))))))).)). ( -37.00) >DroSim_CAF1 82195 95 + 1 GGGCAUGGUGGUGGAGAGAGGUGACGAGGGCGAAGGCACGGGAAAGGCCUCGAGUGCCGCAAGAGCACUUAAUACUAAUUAGCUUUGCGCCUACG (((((.(((..(((...(((((..((...((....)).))......)))))(((((((....).))))))....)))....))).))).)).... ( -32.00) >DroEre_CAF1 84726 73 + 1 GGGCAUGGUUG---AGGGA--G-----------------AGGAAUGGCCUCGAGUGCCGCAAGAGCACUUAAUACUAAUUAGCUUUGCGCCUACG (((((.(((((---(....--(-----------------(((.....))))(((((((....).))))))........)))))).))).)).... ( -27.40) >consensus GGGCAUGGUGGUGGAGAGAGGGGACGAGGGCGAAGGCGAGGGAAAGGCCUCGAGUGCCGCAAGAGCACUUAAUACUAAUUAGCUUUGCGCCUACG (((((.(((.....((.((((........((....))..........))))(((((((....).))))))....)).....))).))).)).... (-22.41 = -23.09 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:46 2006