Locus 4806

Sequence ID 2L_DroMel_CAF1
Location 13,726,516 – 13,726,623
Length 107
Max. P 0.574076
window7602

overview

Window 2

Location 13,726,516 – 13,726,623
Length 107
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 79.75
Mean single sequence MFE -32.32
Consensus MFE -17.66
Energy contribution -19.58
Covariance contribution 1.92
Combinations/Pair 1.25
Mean z-score -1.88
Structure conservation index 0.55
SVM decision value 0.08
SVM RNA-class probability 0.574076
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13726516 107 - 22407834
AUUGCCAUUGGCAGG-CUUGUAUAAGCGAUUUAGUAACGCUUGAGCGAGCAAUGAAGUCAGAGCCAAGUCCACGAUGUUUUCGGCUUUUUUGCCUAAUUUGUGCCCUA
........((((..(-(((((.((((((.........)))))).))))))..((....))..))))((..(((((....((.(((......))).)).)))))..)). ( -30.40)
>DroSec_CAF1 83770 107 - 1
AUUGCCAUUGGCAGG-CUUGUACAAGCGAUUUAGUACCGCUUGAGCGAGCAAUGAAGUCAGAGCCAAGUCCACGAUGUUUUUGGCUUUUUUGCCUAAUUUGUGCCCUA
...((((..((((((-(((((.((((((.........)))))).)))))).........(((((((((..(.....)..))))))))).))))).....)).)).... ( -36.00)
>DroSim_CAF1 81594 107 - 1
AUUGCCAUUGGCAGG-CUUGUACAAGCGAUUUAGUUUCGCUUGAGCGAGCAAAGAAGUCAGAGCCAAGUCCACGAUGUUUUCGGCUUUUUUGCCUAAUUUGUGCCCUA
..((((...))))((-(((((.(((((((.......))))))).))))((((((((((((((((...(....)...))))).))))))))))).........)))... ( -36.80)
>DroWil_CAF1 243952 100 - 1
AAUGCCAAUGGCAUAAUUUGUACAAGCGAUUUAGUAUCGCUUGAGCGGACAAUAAAGUCAACUCCAAGUCCAAGU------UGGCCU-UUUGCCUAAUU-GUGUAGUG
..(((((((((((...(((((.((((((((.....)))))))).))))).......(((((((.........)))------))))..-..))))..)))-).)))... ( -29.50)
>DroAna_CAF1 93308 107 - 1
AUUGCCACUGGCAUG-CUGAUACCAGCGAUUUAGUGGCGCCUGAGCGAACAAUGAAUCCAGAACCAAGUCCAAGUUGAAUUUGGCUUUUUUGCCUAAUUUGUGCGUAA
...((((((((..((-(((....)))))..))))))))......(((.((((......(((((..(((.((((((...))))))))))))))......)))).))).. ( -30.70)
>DroPer_CAF1 105395 107 - 1
AUUGCCAUCGGCAUA-CUCGUACCAGCGAUUUAGUGUCGCUUGAGCGGACAAUAAAGCCAGCGCCAAGUCACAGCAGAAUCUGGUUUUUCUGCCUAAUUUGUGUGGGG
..((((...))))..-......(((((((.(((((((.(((((.((((.(......))).))..))))).)))((((((........)))))))))).)))).))).. ( -30.50)
>consensus
AUUGCCAUUGGCAGG_CUUGUACAAGCGAUUUAGUAUCGCUUGAGCGAACAAUGAAGUCAGAGCCAAGUCCAAGAUGUUUUUGGCUUUUUUGCCUAAUUUGUGCCCUA
...((((..((((...(((((.((((((.........)))))).)))))..........(((((((((...........)))))))))..)))).....)).)).... (-17.66 = -19.58 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:45 2006