| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,718,693 – 13,718,792 |
| Length | 99 |
| Max. P | 0.820597 |
| Location | 13,718,693 – 13,718,792 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 81.53 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -19.44 |
| Energy contribution | -18.28 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13718693 99 - 22407834 CGGAAGCAAAAAAAAAAAAAAGAUAAACUUUCGUUUAAUGCCCACACUUUUGGGUGUCGUUUCCAGCAUGACACCAG--CAGAAAGCAGAAAAUGCUAUCA .((((((................(((((....)))))(((((((......))))))).)))))).((.((....)))--).((.((((.....)))).)). ( -25.10) >DroPse_CAF1 96274 93 - 1 CGGGAGGAAAGA------AU-GGAAAACUUUCAUUUAAUGCCCGCACUUCUGGGUGUCGUUUCCAGCAUGACAUCAGCGCAGAGAGCAGCA-GGGCUCUUG .(((......((------((-(((.....)))))))....)))((.((....((((((((.......)))))))))).)).((((((....-..)))))). ( -26.60) >DroSec_CAF1 75891 93 - 1 CGGGAGCAAAAA------AAGGAGAAACUUUCGUUUAAUGCCCACACUUUUGGGUGUCGUUUCCAGCAUGACACCAG--CAGAAAGCAGAAAAUGCUUUCG .((((((....(------((.((((...)))).))).(((((((......))))))).)))))).((.((....)))--).(((((((.....))))))). ( -27.80) >DroYak_CAF1 76312 91 - 1 CAGGAGCAAAAA--------AGAGAAACUUUCCUUUAAUGCCCACACUUUUGGGUGUCGUUUCCAGCAUGACACCAG--CAGAAAGCAGAAAAUGCUCUCG ..((.(((..((--------((.((.....))))))..))))).........((((((((.......))))))))..--..((.((((.....)))).)). ( -24.50) >DroAna_CAF1 84142 94 - 1 CGAGAGCAAAAAAA-----AAUAAAAAACUUCGUUUAAUGCCCACACUUUUGGGUGUCGUUUCUAGUAUGACACCAG--CAGGGAGCUGCAAACGCUUUUG (((((((.......-----.................................((((((((.......)))))))).(--(((....))))....))))))) ( -25.90) >DroPer_CAF1 96832 91 - 1 CGGGAGGAAAGA------AU-GGAAAACUUUCAUUUAAUGCCCGCACUUCUGGGUGUCGUUUCCAGCAUGACAUCAG--CAGAGAGCAGCA-GGGCUCUUG (((((.....((------((-(((.....)))))))...((((((.((((((((((((((.......))))))))..--)))).))..)).-))))))))) ( -26.30) >consensus CGGGAGCAAAAA______AAAGAAAAACUUUCGUUUAAUGCCCACACUUUUGGGUGUCGUUUCCAGCAUGACACCAG__CAGAAAGCAGAAAAUGCUCUCG ((((((...............(((.....)))..............))))))((((((((.......))))))))......((((((.......)))))). (-19.44 = -18.28 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:44 2006