Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,710,151 – 13,710,254 |
Length | 103 |
Max. P | 0.521546 |
Location | 13,710,151 – 13,710,254 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 83.88 |
Mean single sequence MFE | -28.63 |
Consensus MFE | -18.34 |
Energy contribution | -18.07 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.35 |
Mean z-score | -2.32 |
Structure conservation index | 0.64 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521546 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13710151 103 - 22407834 UGCUCCUGGGUUGGACUAUUGAUCCCAGACCCAUUUGGCGCACCAGAAACUCCUGGGCCGCCACCAUCUGCUCCUUUUGCUCUUCCUCAUCCCAACCAUUCUC ........((((((.....................(((((..((((......))))..)))))......((.......))...........))))))...... ( -25.80) >DroSec_CAF1 67629 103 - 1 UGCUCCUAGGUUGGACUAUUGAUCCCAGACCCAUUUGGCGCACCAGAAAUUCCUGGGCCGCCACCAUCUGCUCCUUUUGCUCAUCCUCAUCCCAACCCUUUUC ........((((((.....................(((((..((((......))))..)))))......((.......))...........))))))...... ( -25.10) >DroSim_CAF1 65465 103 - 1 UGCUCCUGGGUUGGACUAUUGAUCCCAGACCCAUUUGGCGCACCAGAAACUCCUGGGCCGCCACCAUCUGCUCCUUUUGCUCAUCCUCAUCCCAACCCUUUUC .......(((((((.....................(((((..((((......))))..)))))......((.......))...........)))))))..... ( -28.60) >DroEre_CAF1 66754 103 - 1 UGCUCCGCGGUUGGACUAUUGAGCCUAGACCCAUCUGGCGCACCAGAAACUCCUGGGCCGCCAUCAUCUGUUGCCUUUGUUGCUCCUCGUCCCAAUCCUUCUC ........((((((((....((((..(((....)))((((..((((......))))..))))...................))))...)).))))))...... ( -26.10) >DroYak_CAF1 67829 103 - 1 UGCUCCUGGGUUGGACUAUUGAGCCCAGACCCAUCUGACGCACCAGAAACUCCUGGGCCGCCUGCAUCUGCUUCUGCUGCUGUUCCUCCUCCCAACCCUUCUC .......(((((((......(.((((((.....((((......)))).....)))))))((..(((........))).))...........)))))))..... ( -31.80) >DroAna_CAF1 72598 103 - 1 UGCUCUUGGGGCGCACUAUGGACCCGAGACCCAUCUGGCGCACCAGGAAUUCUUGGGCCUUUAGCAACUCCUGCGUGGCCUGCUCCUCCUGCCACUCCUUCUC .((....((((((..((((((.(((((((....(((((....)))))...)))))))))....(((.....)))))))..))))))....))........... ( -34.40) >consensus UGCUCCUGGGUUGGACUAUUGAUCCCAGACCCAUCUGGCGCACCAGAAACUCCUGGGCCGCCACCAUCUGCUCCUUUUGCUCAUCCUCAUCCCAACCCUUCUC ........((((((.(....)....((((......(((((..((((......))))..)))))...)))).....................))))))...... (-18.34 = -18.07 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:43 2006