Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,706,711 – 13,706,804 |
Length | 93 |
Max. P | 0.920498 |
Location | 13,706,711 – 13,706,804 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 77.34 |
Mean single sequence MFE | -34.67 |
Consensus MFE | -20.81 |
Energy contribution | -21.17 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.10 |
Mean z-score | -2.02 |
Structure conservation index | 0.60 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13706711 93 + 22407834 ---------GGGUGGGUGGACCAGCUGGUA-------A-----GGUGAGCAGGAAACAACAAGGCCACGCCGUAUCCCGCCGAAUGUGUUGAGGCACUUUGGCGAGGUAACGAA ---------....((((((.((.(((.(..-------.-----..).))).(....).....)))))).))((..(((((((((.((((....))))))))))).))..))... ( -34.30) >DroPse_CAF1 75319 104 + 1 ---------CGGAAGGUGGGGCAGGAGAUAUGUGGCAGGAGGAAGCAGGCAGGAAGCAACAAGGCCACGCCAUACCGCGCC-AAUGUGUUGAGGCACUUUGGCGAGGUAACGAA ---------((...((((.(((........(((..(.....)..))).((.....))......))).)))).((((.((((-((.((((....)))).)))))).)))).)).. ( -35.80) >DroEre_CAF1 63255 95 + 1 -------GAAGGCGGGUGGACCAGCUGGUA-------A-----GGUGAGCAGGAAACAACAAGGCCACGCCGCAUCCCGCCGAAUGUGUUGAGGCACUUUGGCGAGGUAACGAA -------....((((((((.((.(((.(..-------.-----..).))).(....).....)))))).))))..(((((((((.((((....))))))))))).))....... ( -38.70) >DroYak_CAF1 64295 102 + 1 GUGGGUGGAAGGUGGGUGGAGCAGCUGGUA-------A-----GGUGAGCAGGAAACAACAAGGCCACGCCGCAUCCCGCCGAAUGUGUUGAGGCACUUUGGCGAGGUAACGAA ((((((((....((....(..((.((....-------)-----).))..).(....)..))...)))).))))..(((((((((.((((....))))))))))).))....... ( -36.10) >DroAna_CAF1 69129 91 + 1 ---------AACACAGUGG---AGAGGGUA-------A----AGGCAGCCAGGAAGCAACAAGGCCACGCCGUAUCCCGCCAAAUGUGUUGAGGCACUUUGGCGAGGUAACGAA ---------......((((---....(((.-------.----.....))).(....).......))))..(((..(((((((((.((((....))))))))))).))..))).. ( -27.30) >DroPer_CAF1 76004 104 + 1 ---------CGGAAGGUGGGGCAGGAGAUAUGUGGCAGGAGGAAGCAGGCAGGAAGCAACAAGGCCACGCCAUACCGCGCC-AAUGUGUUGAGGCACUUUGGCGAGGUAACGAA ---------((...((((.(((........(((..(.....)..))).((.....))......))).)))).((((.((((-((.((((....)))).)))))).)))).)).. ( -35.80) >consensus _________AGGAGGGUGGAGCAGCUGGUA_______A_____GGCAAGCAGGAAACAACAAGGCCACGCCGUAUCCCGCCGAAUGUGUUGAGGCACUUUGGCGAGGUAACGAA ...............((((.........................(....).(....).......))))....((((.(((((((.((((....))))))))))).))))..... (-20.81 = -21.17 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:41 2006