Locus 48

Sequence ID 2L_DroMel_CAF1
Location 208,555 – 208,647
Length 92
Max. P 0.546449
window68

overview

Window 8

Location 208,555 – 208,647
Length 92
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 75.20
Mean single sequence MFE -23.03
Consensus MFE -14.93
Energy contribution -14.85
Covariance contribution -0.08
Combinations/Pair 1.33
Mean z-score -1.13
Structure conservation index 0.65
SVM decision value 0.03
SVM RNA-class probability 0.546449
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 208555 92 + 22407834
CCAGGACGAAAAAAUAGUUAACAACUUGCCCGAUCGCCAGCGGGUGGAGAGAGGUGGGUUGAUAUUAAUUCU-----UAAAAGAGAGUUCUUGACAC---------------
.(((((...............(((((..(((..(((((....)))))...).))..)))))......(((((-----(....)))))))))))....--------------- ( -25.00)
>DroGri_CAF1 854 77 + 1
CCAGGACGAGAAGAUAGUUAACAAUUUGCCAGCGCGACAGAGUGUGCAUCGUGGUAAGUAGAUUUGAUC--------UAAGAGAA---------------------------
...........((((........(((((((((((((......)))))....)))))))).......)))--------).......--------------------------- ( -13.66)
>DroSec_CAF1 848 92 + 1
CCAGGACGAAAAAAUAGUUAACAACUUGCCUGAUCGCCAGCGGGUGGAGAGAGGUGGGUUGAUAUUAAUUCU-----UAAAAGAGAGUUCUUGCCAC---------------
...((.(((............(((((..(((..((.(((.....))).)).)))..))))).....((((((-----(....))))))).)))))..--------------- ( -25.10)
>DroSim_CAF1 430 92 + 1
CCAGGACGAAAAAAUAGUUAACAACUUGCCUGAUCGCCAGCGGGUGGAGAGAGGUGGGUUGAUAUUAAUUCU-----UAAAAGAGAGUUCUUGACAC---------------
.(((((...............(((((..(((..((.(((.....))).)).)))..)))))......(((((-----(....)))))))))))....--------------- ( -25.20)
>DroEre_CAF1 848 111 + 1
UCAGGACGAAAAAAUAGUUAACAACUUGCCUGAUCGCCAGCGGGUGGAGAGAGGUGGGUUGAUAUUAAUUCUUAUCUUAAAAGAGA-GUCUCGACUCGAUGUUAUAUUUGAG
((..((((((..((((.....(((((..(((..((.(((.....))).)).)))..))))).))))..)))...((((....))))-)))..))(((((........))))) ( -28.40)
>DroYak_CAF1 847 91 + 1
CCAGGACGAAAAAAUAGUUAACAACUUGCCUGAUCGCCAGCGGGUGGAGAGAGGUGGGUCGAUAUUA------------AAAGAGAAAUCUUGACUCCAUUUU---------
...(((...............(.(((..(((..((.(((.....))).)).)))..))).)......------------.((((....))))...))).....--------- ( -20.80)
>consensus
CCAGGACGAAAAAAUAGUUAACAACUUGCCUGAUCGCCAGCGGGUGGAGAGAGGUGGGUUGAUAUUAAUUCU_____UAAAAGAGAGUUCUUGACAC_______________
.....................((((((((((..(((((....)))))....))))))))))................................................... (-14.93 = -14.85 +  -0.08) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:09 2006