Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,699,794 – 13,699,892 |
Length | 98 |
Max. P | 0.630282 |
Location | 13,699,794 – 13,699,892 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.83 |
Mean single sequence MFE | -28.71 |
Consensus MFE | -16.98 |
Energy contribution | -16.84 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.33 |
Mean z-score | -2.13 |
Structure conservation index | 0.59 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13699794 98 + 22407834 AUGAAACUUUAUCCCUGGAGUGCUAAAUGUCUGGCCAGAUGGCCAAGCUCGACCAAAAGUCCAAGCAUUUU----GGGCACUUUCCCCAACUAUGUUUC--GGU .((((((.........(((((((.....(..(((((....)))))..)....((((((((....)).))))----)))))))))..........)))))--).. ( -28.91) >DroSec_CAF1 56152 98 + 1 AUGAAACUUUAUCCCUGGAGUGCUAAAUGUCUGGCCAGAUGGCCAAGCUCGAGCAAAAGUCCGAGUAUUUU----GGGCACUUUCCCCAACUAUGUUUC--GGU .((((((.........((((((((.......(((((....))))).(((((..(....)..))))).....----.))))))))..........)))))--).. ( -30.91) >DroSim_CAF1 54548 98 + 1 AUGAAACUUUAUCCCUGGAGUGCUAAAUGUCUGGCCAGAUGGCCAAGCUCGAGCAAAAGUCCAAGCAUUUU----GGGCACUUUCCCCAACUAUGUUUC--GGU .((((((.........((((((((....(..(((((....)))))..)...))))...(((((((...)))----))))...))))........)))))--).. ( -30.13) >DroEre_CAF1 56464 95 + 1 AUGAAACUUUAUCCCCGGAGUGCUAAAUGUCUGGCCAGAUGGCCGGGCUCUAGCA--GGCACCAGCGAUU-----GUGCACUUUCCCCAACUUUGUUUC--GGU .((((((.........(((((((((...((((((((....))))))))..)))))--.((((........-----))))...))))........)))))--).. ( -32.93) >DroYak_CAF1 57221 97 + 1 AUGAAACUUUAUCCCCGGAGUGCUAAAUGUCUGGCCAGAUGGCCAAGCUCUACCAAAAGUCCCAGCAUUC-----UUGCACUUUACCCAACUAUGUUUC--GGU .((((((.........(((((((..(((((.(((((....))))).(((........)))....))))).-----..)))))))..........)))))--).. ( -23.71) >DroAna_CAF1 62578 97 + 1 AUGAAACUUUAUCCCCGGAGUGGAAAAGGUCUAGCCAUCUGGCCAAACUCC-------GUCCAAACAUCUGGUUCUAGGUUUCUCCCUAAAUAUUUUUCUAGGU ..(((((((.....(((((.((((...((....(((....)))......))-------.))))....)))))....)))))))..((((..........)))). ( -25.70) >consensus AUGAAACUUUAUCCCCGGAGUGCUAAAUGUCUGGCCAGAUGGCCAAGCUCGAGCAAAAGUCCAAGCAUUUU____GGGCACUUUCCCCAACUAUGUUUC__GGU ..(((((.........(((((((.....((.(((((....))))).))..........((....))...........)))))))..........)))))..... (-16.98 = -16.84 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:35 2006