| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,691,411 – 13,691,502 |
| Length | 91 |
| Max. P | 0.953382 |
| Location | 13,691,411 – 13,691,502 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 79.42 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -12.98 |
| Energy contribution | -13.78 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13691411 91 - 22407834 ---A------AAGCAGGAAAAAACG-GCAGCUAAGCUGUACGAAAAACGUGCUAAAACGUAAAUCAACAGCGAAAAUCGUGUUGAGCAUUUUUUCGUAGCU ---.------.(((........(((-((......)))))(((((((((((......))))...((((((.((.....)))))))).....))))))).))) ( -25.20) >DroVir_CAF1 67301 89 - 1 ---A------AUGCU-AAAAAACUC-AACUCCAAACUAUACGAAAAACGUGCUAAAACGUAAAUCAACAGCGAAAAUCGUGUUGAGCAUUUUUCGUAG-CC ---.------.....-.........-............((((((((((((......))))...((((((.((.....))))))))....)))))))).-.. ( -18.40) >DroPse_CAF1 57147 98 - 1 ---AAAAGGGAAGAAGAAAAAAACGUCCAGCUAAACUAGACGAAAAACGUGCUAAAACGUAAAUCAACAGCGAAAAUCGUGUUGAGCAUUUUUUCGUAGCU ---.........(((((((....((((.((.....)).))))....((((......))))...((((((.((.....))))))))...)))))))...... ( -20.50) >DroGri_CAF1 71503 90 - 1 ---A------AUGCCAAAAAUAGUG-AGCUCCAAACUAUACGAAAAACGUGCUAAAACGUAAAUCAACAGCGAAAAUCGUGUUGAGCAUUUUUUCUUG-UC ---(------((((.....(((((.-........))))).......((((......))))...((((((.((.....)))))))))))))........-.. ( -16.20) >DroEre_CAF1 48078 90 - 1 ---A------AAGCUGGAAAAAC-G-GCGGCUAAGCUUUACGGAAAACGUGCUAAAACGUAAAUCAACAGCGAAAAUCGUGUUGAGCAUUUUUUCGUAGCU ---.------..((((......)-)-)).....((((..(((((((((((......))))...((((((.((.....)))))))).....))))))))))) ( -25.40) >DroAna_CAF1 52266 94 - 1 AAAA------GAGCUGGAAAAAACG-UCACCUUAACUGGACGGAAAACGUGCUAAAACGUAAAUCAACAGUGAAAAUCGUGUUGAGAAUUUUUUUGCAGCU ....------.(((((.((((((((-((..........))))....((((......))))...((((((.((.....))))))))....)))))).))))) ( -23.10) >consensus ___A______AAGCUGAAAAAAACG_ACAGCUAAACUAUACGAAAAACGUGCUAAAACGUAAAUCAACAGCGAAAAUCGUGUUGAGCAUUUUUUCGUAGCU ......................................((((((((((((......))))...((((((.((.....)))))))).....))))))))... (-12.98 = -13.78 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:32 2006