Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,688,436 – 13,688,538 |
Length | 102 |
Max. P | 0.700876 |
Location | 13,688,436 – 13,688,538 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 73.00 |
Mean single sequence MFE | -16.89 |
Consensus MFE | -1.30 |
Energy contribution | -1.54 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.27 |
Mean z-score | -1.54 |
Structure conservation index | 0.08 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13688436 102 + 22407834 UUUUGAUGCAGCCUAGAGUGUGUCAUUCACAUAUUCGAACAA------------ACAAUACUAGUUACAUUUAGCCU--GCUCCACUUGAGUACAUUUCCACAAUCACCACUCAUC ...((..((((.(((((((((((.....)))))))).....(------------((.......))).....))).))--))..))..(((((.................))))).. ( -17.53) >DroSec_CAF1 44602 102 + 1 UUUUGAUGCAGCCUAGAGU--GUCAUUCACAUAUUCGAACAA------------ACAAUCCUAGUUACAUUUAGCCUGUGCUCCACUUGAGUACAUUUCCACAAUCAUCACUCAUC ...(((((....((((..(--((..(((........)))...------------)))...))))............(((((((.....)))))))..........)))))...... ( -15.80) >DroSim_CAF1 43090 102 + 1 UUUUGAUGCAGCCUAGAGU--GUCAUUCACAUAUUCGAACAA------------ACAAUACUAGGUACAUAUAGCCUGUGCUCCACUUGAGUACAUUUCCACAAUCAUCACUCAUC ...(((((..((((((..(--((..(((........)))...------------)))...))))))..........(((((((.....)))))))..........)))))...... ( -21.20) >DroEre_CAF1 45110 95 + 1 UUUUGAAGUAGUGUUGAGU--GCUAUUCACGAAUUCAUUCACAA----------GUCAUACUAGUUACAUUUCCUCU--CAUCCUCUUGAAU-------CACCAUCACCACUCAUA ...(((.((.(((.((.((--(..(((((.(((....)))((.(----------(.....)).))............--........)))))-------))))).))).))))).. ( -11.60) >DroYak_CAF1 44534 110 + 1 UUCUGAAGCAGCGCAGAGU--GUCAUUCAAAAAUUCGAACAAAAUGAUGAAUUUAUCAUCCUAGUUACACAUACUCU--GCCAUUCCUGGAUGCAU--ACACAAUCAACACUCAUA ...(((......(((((((--((..(((........)))......(((((.....)))))..........)))))))--))((((....))))...--......)))......... ( -18.30) >consensus UUUUGAUGCAGCCUAGAGU__GUCAUUCACAUAUUCGAACAA____________ACAAUACUAGUUACAUUUAGCCU__GCUCCACUUGAGUACAUUUCCACAAUCACCACUCAUC ...............((((............(((((((................................................)))))))................))))... ( -1.30 = -1.54 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:31 2006