Locus 4795

Sequence ID 2L_DroMel_CAF1
Location 13,688,114 – 13,688,204
Length 90
Max. P 0.711585
window7586

overview

Window 6

Location 13,688,114 – 13,688,204
Length 90
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 70.34
Mean single sequence MFE -30.34
Consensus MFE -10.37
Energy contribution -11.68
Covariance contribution 1.31
Combinations/Pair 1.24
Mean z-score -1.82
Structure conservation index 0.34
SVM decision value 0.38
SVM RNA-class probability 0.711585
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13688114 90 + 22407834
GUGUGCGUAAAUAGCUUUGCUUGCCACCAUCGCUGAUACUGAAG----------------GGGAAAAUUCGUGGAUGGGUAUGGGCUUGG------AUGUGGGCAAGGCAGU
.............((((((((..(..(((..(((.(((((.(.(----------------.(((...))).)...).))))).))).)))------..)..))))))))... ( -28.90)
>DroSec_CAF1 44279 90 + 1
GUGUGCGUAAAUAGCUUUGCUUGCCACCACCGCUGAUACUGAAG----------------GGGAAAAUUCGUGGGUGGGUAUGGGUGUGG------GUGUGGGCAAGGCAGU
.............((((((((..(.(((..((((.(((((.(.(----------------.(((...))).)...).))))).))))..)------)))..))))))))... ( -33.20)
>DroSim_CAF1 42758 96 + 1
GUGUGCGUAAAUAGCUUUGCUUGCCACCACCGCUGAUACUGAAG----------------GGGAAAAUUCGUGGGUGGGUAUGGGUGUGGGUGUGGGUGUGGGCAAGGCAGU
.............((((((((..(((((..((((.(((((.(.(----------------.(((...))).)...).))))).))))..)))).....)..))))))))... ( -33.00)
>DroYak_CAF1 44232 79 + 1
GGGUGCGUAAAUAGCUUUGCUUGCCA---CCGCUGAUACUGAAG----------------GGGAAAAUUCUAGGA--------UGUGUGG------GUGUGGGCAAUGCAGU
....((.......)).(((((((((.---.((((.((((.....----------------((((...))))....--------.)))).)------)))..))))).)))). ( -23.40)
>DroAna_CAF1 49109 100 + 1
GUGUGCGUAAAUAGCUUUUGUUGU-GCCACUGUUGAUACUCAGCCGAACUGAGGCAGGCAGUGAGGGUUCGGGGACCGAGAGG-----CC------GGUUGGGUGGGGCAGU
(((.((....(((((....)))))-)))))((((..((((((((((((((...((.....))...)))))..((.((....))-----))------))))))))).)))).. ( -33.20)
>consensus
GUGUGCGUAAAUAGCUUUGCUUGCCACCACCGCUGAUACUGAAG________________GGGAAAAUUCGUGGAUGGGUAUGGGUGUGG______GUGUGGGCAAGGCAGU
.............((((((((..(..(((((..(((................................)))..)))))....................)..))))))))... (-10.37 = -11.68 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:30 2006