Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,674,504 – 13,674,597 |
Length | 93 |
Max. P | 0.999742 |
Location | 13,674,504 – 13,674,597 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 73.20 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -15.05 |
Energy contribution | -15.79 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.18 |
Mean z-score | -2.96 |
Structure conservation index | 0.59 |
SVM decision value | 3.98 |
SVM RNA-class probability | 0.999742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13674504 93 - 22407834 CUCACACUCACUUACCCACUCAGACUCGAUGCCCCAAAGGCUGCAGCCUUUGAGCAUUUUUAACAUGGCUCAGCCUGUCCGCAUUGGCCACUA .........................(((((((.....((((((.((((.(((((....)))))...))))))))))....)))))))...... ( -24.50) >DroPse_CAF1 34341 71 - 1 CUCG--G------------------UCGGUGCUG--UCGCCUCGGGCCCUUUAGAAUUUUUAACAUGGCUCGGCCUGUCUGCAUUGGCCACUA ...(--(------------------(((((((.(--.((..(((((((..(((((...)))))...)))))))..)).).))))))))).... ( -26.70) >DroSec_CAF1 30820 75 - 1 CUCACAC------------------UCGAUGCCCCAAAGGCUGCAGCCUUUGAGCAUUUUUAACAUGGCUCAGCCUGUCCGCAUUGGCCACUA .......------------------(((((((.....((((((.((((.(((((....)))))...))))))))))....)))))))...... ( -24.50) >DroPer_CAF1 34892 71 - 1 CUCG--G------------------UCGGUGCUG--UCGCCUCGGGCCCUUUAGAAUUUUUAACAUGGCUCGGCCUGUCUGCAUUGGCCACUA ...(--(------------------(((((((.(--.((..(((((((..(((((...)))))...)))))))..)).).))))))))).... ( -26.70) >consensus CUCA__C__________________UCGAUGCCC__AAGCCUCCAGCCCUUGAGAAUUUUUAACAUGGCUCAGCCUGUCCGCAUUGGCCACUA .........................(((((((.....((((((.((((..................))))))))))....)))))))...... (-15.05 = -15.79 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:28 2006