Locus 4791

Sequence ID 2L_DroMel_CAF1
Location 13,673,378 – 13,673,479
Length 101
Max. P 0.897510
window7582

overview

Window 2

Location 13,673,378 – 13,673,479
Length 101
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.28
Mean single sequence MFE -26.19
Consensus MFE -17.19
Energy contribution -17.22
Covariance contribution 0.03
Combinations/Pair 1.29
Mean z-score -1.85
Structure conservation index 0.66
SVM decision value 1.00
SVM RNA-class probability 0.897510
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13673378 101 - 22407834
-----UGGCGGAGAUCGGGGC---GGACUGGCAAAAUGGUUUAAAACUCAAUUAAAGUUUUAGCCGCAAAAUAAAUGCAAAAACGACGACGGCAGCGUCGACAGGACG-----A
-----((.((..(.(((.(((---.(((((......)))))(((((((.......))))))))))(((.......))).....))))..)).)).((((.....))))-----. ( -24.80)
>DroVir_CAF1 39949 112 - 1
CCUCGUUGCGGCGCUGGG--CGAACAGCCAGCAAAAUGGUUUAAAACUCAAUUAAAGUUUUAGCCGCAAAAUAAAUGCAAAAACGGCGGCGGCAGCGUCGACAACAGCUACAGA
....((((((((((((((--(.....)))............(((((((.......)))))))(((((..................)))))..)))))))).))))......... ( -36.47)
>DroPse_CAF1 33134 101 - 1
-----AGGCGGGACUGGAGGC---CAACCAGGAAAAUGGUUUAAAACUCAAUUAAAGUUUUAGCCGCAAAAUAAAUGCAAAAACGACGAUGGCAGCGUCGACAGGAGG-----G
-----.(((((((((.(((..---.(((((......))))).....)))......)))))).)))(((.......))).....(((((.......)))))........-----. ( -23.70)
>DroGri_CAF1 46344 88 - 1
--------------------------GCCAGCAAAAUGGUUUAAAACUCAAUUAAAGUUUUAGCCGCAAAAUAAAUGCAAAAAUGGCGUCGACGGCGUCGACAACAGCUACAGA
--------------------------((((.......((((.((((((.......))))))))))(((.......))).....))))((((((...))))))............ ( -23.20)
>DroAna_CAF1 31695 102 - 1
-----GGGCGGAGAUUGGGGC--UCGACCAGCAAAAUGGUUUAAAACUCAAUUAAAGUUUUAGCCGCAAAAUAAAUGCAAAAACGACGACGGCAUCGCCGACAGGAGG-----G
-----.(((((.(((((((..--..(((((......))))).....))))))).........((((((.......)))......(....)))).))))).........-----. ( -25.30)
>DroPer_CAF1 33697 101 - 1
-----AGGCGGGACUGGAGGC---CAACCAGGAAAAUGGUUUAAAACUCAAUUAAAGUUUUAGCCGCAAAAUAAAUGCAAAAACGACGAUGGCAGCGUCGACAGGAGG-----A
-----.(((((((((.(((..---.(((((......))))).....)))......)))))).)))(((.......))).....(((((.......)))))........-----. ( -23.70)
>consensus
_____AGGCGGAGCUGGGGGC___CAACCAGCAAAAUGGUUUAAAACUCAAUUAAAGUUUUAGCCGCAAAAUAAAUGCAAAAACGACGACGGCAGCGUCGACAGGAGG_____A
.......((((..............(((((......)))))(((((((.......))))))).))))................(((((.......))))).............. (-17.19 = -17.22 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:26 2006